FC930478

Overview
NameFC930478
Unique NameFC930478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_STAAR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain MRSA252) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 55/202 (27.23%), Postives = 105/202 (51.98%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            D+++ PF++ D+N      + DGDAV+ +NFR DR   L++      F+ F   +   + YA   +Y+  +   +  +    +++ T GE   +N +     +ET K+ HVT+F +G R+  F       ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++
Sbjct:  230 DEFVVPFIVEDQNDG----VNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNID--AAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVV 423          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_PROMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 61/202 (30.20%), Postives = 99/202 (49.01%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            D++L P  +     K      DGD ++ FNFR DR   L K++    F +F R   P++    + QY  E+ LP   +  P  +D   G+ +  +G+  +  +ET K+ HVT+F+NG             V  PS    T+++ P+M A ++ +  ++AI S  +  + +N  N DMVGHTG   AT  A    D+ +  I+
Sbjct:  243 DEFLEPIRLTPSYLK------DGDGLIMFNFRPDRARQLIKSITLPSFSEFKRKYQPQLNVVTLTQY--EMDLPVSVVFPPESLDNLLGQVISEHGLLQYRTAETEKYPHVTYFFNGGIEQPLPGEKRHLV--PSPRVATYDLSPEMSAEKLTKSCQEAIESGIYSLIVINYANPDMVGHTGIHAATKKAISTVDKCIGKIL 434          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_PORYE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra yezoensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 60/199 (30.15%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   70 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAV 666
            +D+++PP  I       +G I D DA+V FNFR DRM  + +A   + F+ F       +R      YD  L     +   P  ++   GE L   G++ F  SET K+ HVT+F+NG     F     E V  P  +  T+++ P M A  + +++  AI    +  + +N  N+DM+GHTG ++ T+ + +  D  +
Sbjct:  235 SDEFIPPSRI------NLGSIKDNDAIVFFNFRPDRMRQIVQAFVQKPFNCFATKPLYNLRVVTFTNYDTSLNTTIAF--HPHILNNFLGEVLYKYGLKQFRVSETEKYAHVTYFFNGGAEEPFPGEDRELVSSPDVT--TYDLSPDMSAELVTQKSISAIKKAIYSCIVINYANADMLGHTGKLKETIQSIETVDRCI 423          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 62/198 (31.31%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAV 666
            D++L P  + D+       + DGD+V+ FNFR DR   + + L  +DFD F+R   PK+      Q   E  LP      P  +D   G+ +   G+R +  +ET K+ HVT+F NG          EE   +PS    T+++ P M A ++ +    AI    +  + +N  N DMVGHTG ++A   A    D  +
Sbjct:  243 DEFLKPVRLSDD------VMQDGDSVLVFNFRPDRARQIVQTLCLDDFDGFERRTTPKLDVVTFTQV--EQDLPVSVAFPPEPLDDLLGQVVAEAGLRQYRTAETEKYPHVTYFMNGGIEQPLPG--EERHLVPSPRVATYDLSPAMSADQLTDSCIDAIDQGTYSLIVINYANPDMVGHTGVMDAATEAIATVDRCI 430          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_SULDN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 1
Query:   64 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            N  D+++ P      +G +     D D+V+  NFR+DRM  +  A+   +F  F++    K+  A + +YD     P  +    P+   T  E +   G+R    +ET K+ HVTFF+NG     +++  E  V IPS +  T++ +P+M A E+ E   K  +   +  + VN  N DMVGHTG++EA  +A    D  +  I+
Sbjct:  219 NETDEFIEPIAFDGYDGMS-----DNDSVLMINFRSDRMREITTAIGESNFSSFEKSDI-KLHVATITEYDKNFSYPVLFKKDSPK--NTLSEVISSAGLRQLHTAETEKYAHVTFFFNGGIDEPYEN--ETRVLIPSPNVRTYDEKPQMSAKEVGEVVLKG-MDEAYDFIVVNFANGDMVGHTGNLEAAKIAVNTVDSELGKIL 412          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_RHOSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 65/199 (32.66%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAV 666
            D+++ P V+ D  G       DGD     NFRADR   +   L    FD +D    P    + GM+ Y  E           P I  T GE++  +G+R F  +ET K+ HVTFF NG R        E+     S    T+++QP+M A ++++   +AI    +  + VN  N DMVGHTGD++A + A +  D  +
Sbjct:  228 DEFIAPTVVGDYAGAR-----DGDGFFCLNFRADRAREILAGLGQPGFDSYDTGTRPDWSAFLGMVDYSKEHDRFMTAAYPKPVIRNTLGEWVASHGLRQFRIAETEKYPHVTFFLNGGREA--PETGEDRYMANSPKVATYDLQPEMSAPDVSDHLVEAI-GAGYDLIVVNYANPDMVGHTGDLKAAMAAVEEVDRGL 418          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 65/199 (32.66%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAV 666
            D+++ P V+ D  G       DGD     NFRADR   +   L    FD +D    P    + GM+ Y  E           P I  T GE++  +G+R F  +ET K+ HVTFF NG R        E+     S    T+++QP+M A ++++   +AI    +  + VN  N DMVGHTGD++A + A +  D  +
Sbjct:  228 DEFIAPTVVGDYAGAR-----DGDGFFCLNFRADRAREILAGLAQPGFDAYDTGARPDWSAFLGMVDYSKEHDRFMTTAYPKPVIRNTLGEWVASHGLRQFRIAETEKYPHVTFFLNGGREA--PETGEDRYMANSPKVATYDLQPEMSAPDVSDHLVEAI-GAGYDLIVVNYANPDMVGHTGDLKAAMAAVEEVDRGL 418          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_STAAW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain MW2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 54/202 (26.73%), Postives = 105/202 (51.98%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            D+++ PF++ ++N      + DGDAV+ +NFR DR   L++      F+ F   +   + YA   +Y+  +   +  +    +++ T GE   +N +     +ET K+ HVT+F +G R+  F       ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++
Sbjct:  230 DEFVVPFIVENQNDG----VNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNID--AAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVV 423          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_STAAS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain MSSA476) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 54/202 (26.73%), Postives = 105/202 (51.98%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            D+++ PF++ ++N      + DGDAV+ +NFR DR   L++      F+ F   +   + YA   +Y+  +   +  +    +++ T GE   +N +     +ET K+ HVT+F +G R+  F       ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++
Sbjct:  230 DEFVVPFIVENQNDG----VNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNID--AAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVV 423          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_STAAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain COL) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 54/202 (26.73%), Postives = 105/202 (51.98%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            D+++ PF++ ++N      + DGDAV+ +NFR DR   L++      F+ F   +   + YA   +Y+  +   +  +    +++ T GE   +N +     +ET K+ HVT+F +G R+  F       ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++
Sbjct:  230 DEFVVPFIVENQNDG----VNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNID--AAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVV 423          
The following BLAST results are available for this feature:
BLAST of FC930478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
GPMI_STAAR1.472e-2027.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMA1.472e-2030.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORYE2.510e-2030.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX3.279e-2031.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SULDN3.279e-2030.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOSK4.282e-2032.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS44.282e-2032.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAW5.593e-2026.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAS5.593e-2026.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAC5.593e-2026.732,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34008A03EF PostHarvC1 Citrus clementina cDNA clone C34008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930478 ID=FC930478; Name=FC930478; organism=Citrus clementina; type=EST; length=684bp
GGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACT
AAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATTG
TTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGTT
GTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCCT
TGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATCC
GTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCAT
TACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAATATTTAGT
GCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGAC
ATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAAT
TTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGT
ACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAGAGGGCAAAGAAGGCCA
TCCTTAGTCGCAGGTTCCACCAGGTACGTGTTAACCTACCAAATAGTGAC
ATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGC
TGCTGATGAAGCTGTCAAGATAATCATTNGATGC
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