FC930478

Overview
NameFC930478
Unique NameFC930478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_HELPY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 1
Query:   64 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  + F  F R  F K+  A M  YD     P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+     +  +      + VN  N DMVGHTG+ EA+V A +A D  +  I+
Sbjct:  218 NITDEFIMPACFKNYCG-----MQDDESFIFINFRNDRAREIVSALGQKQFSGFKRQVFKKLHIATMTPYDNTFPYP--VLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVTLAVLEQ-MKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEIL 412          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 62/209 (29.67%), Postives = 97/209 (46.41%), Query Frame = 1
Query:   64 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKA----LEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F+ F R  F K+  A M  YD     P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A    L + E+ +          + VN  N DMVGHTG+ EA++ A +A D  +  I+
Sbjct:  218 NITDEFIIPACFKNYCG-----MQDDESFIFINFRNDRAREIVSALGQKEFNSFKRQAFKKLHIATMTPYDNSFPYP--VLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKGVTLAVLEQMRLGT-----DLIIVNFANGDMVGHTGNFEASIKAVEAVDACLGEIL 412          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_HELAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter acinonychis (strain Sheeba) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 66/209 (31.58%), Postives = 101/209 (48.33%), Query Frame = 1
Query:   64 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR---FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F+ F R  F K+  A M  YD     P   ++ P E I  T  E +    +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+      A+L +       + VN  N DMVGHTG+ EA+V A +A D ++  I+
Sbjct:  219 NITDEFIMPTCFKNYCG-----MQDDESFIFINFRNDRAREITSALGQKEFNGFKRQVFKKLHIATMTPYDKNFPYP---ILFPKESIQNTLAEVVSECNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVT----LAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDTSLGEIL 413          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma gallisepticum GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 61/206 (29.61%), Postives = 106/206 (51.46%), Query Frame = 1
Query:   58 QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDF-DKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDR-TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAV 666
            Q N  D+++ P    +     +  I D D+VV  NFR DR   L+  +   ++ D   ++R   + +  M+QY+G   +    +  PP+I++ T GE L +   +    +ET K+ HVTFF++G     + +  E+ V +PS   + T+++ P+M A  I ++  K     ++    +N  N DMVGHTG+ EAT+   +A D  +
Sbjct:  221 QQNITDEFIVPAYNNNYKSDEI-TIQDNDSVVFANFRPDRARQLSHYVFGSNYYDHHPQLRRKNLYFVIMMQYEG---INPSAICYPPKIEKNTLGEVLKNANKKQLRIAETEKYAHVTFFFDGGVEVEYQN--EDKVLVPSRKDVKTYDLAPEMSAAAIVDQLLKVYT--KYDLTVLNFANPDMVGHTGNYEATLKGLEALDHEI 418          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma penetrans GN=gpmI PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 66/223 (29.60%), Postives = 108/223 (48.43%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAK----ALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAAD 657
            G + + F + ++ V K   + N  D++L P  I D N      I D DAV+  NFR DR   ++     +  YE+ +         + YA M+ Y+G    P+  L     +  T GE + ++G+     +ET K+ HVTFF++G      D   E  + + S    T++  P M A+EI ++  + +   +F  + +N  N+DMVGHTG     V+A +A D
Sbjct:  205 GISNNYFDNPIDYVNKQYSE-NIFDEFLVPARINDSNVV----IKDNDAVIHANFRPDRARQISHLFCGSTVYEEKNDHP---LKNLYYAIMMTYEGIT--PTSILFPTVVVKNTFGEVVANSGLTQLRIAETEKYAHVTFFFDGGVE--VDLKNESKILVDSKKVKTYDEVPAMSAVEITDKLIENL--DKFDVIVLNFANADMVGHTGKYNEAVLAIEALD 413          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 232) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 62/227 (27.31%), Postives = 110/227 (48.46%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE--IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAAD 657
            G+A + F   ++ V   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D +++  +       +  M++Y+G      + LV+  E  ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + +++  + +N  N DMVGHTGD++AT+ A +  D
Sbjct:  213 GKAENTFTDPIDYVN-FQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG-----INCLVAFEEMRVENPLGKLICMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQKYDFIIMNFANPDMVGHTGDLKATIKAVEILD 422          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 59/220 (26.82%), Postives = 100/220 (45.45%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAAD 657
            G +  KF +  E + K   Q  +++ ++P         K V  + DGD+++ FNFR DR   L   L       F   +  KI ++  M++Y+G   + +       EI    G+     G++    +ET K+ HVT+F +G     + ++    VE  S    ++   P+M A  I +   K   ++ F    +N  N DMVGHTG + +T+ A +  D
Sbjct:  209 GNSNSKFDNWSEFLNKQYSQEISDEFFIPSI----NASKNVNFVKDGDSIIFFNFRPDRARQLTHLLIGSSLYDFKPKKPVKINKFCSMMKYEG---IETLIAFEEMEIKNPIGKVAEKAGLKQLRLAETQKYAHVTYFMDGGVDIEYKNSKRIMVE--SQKVRSYADHPEMSAKGITDELIKN--AKDFDLTILNYANPDMVGHTGVLTSTIKAVEILD 417          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 61/227 (26.87%), Postives = 109/227 (48.02%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE--IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAAD 657
            G+A + F   ++ +   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D +++  +       +  M++Y+G      + LV+  E  ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D
Sbjct:  206 GKAENTFTDPIDYIN-FQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG-----INCLVAFEEMRVENPLGKLISMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILD 415          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 7448) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 61/227 (26.87%), Postives = 109/227 (48.02%), Query Frame = 1
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE--IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAAD 657
            G+A + F   ++ +   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D +++  +       +  M++Y+G      + LV+  E  ++   G+ +   G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D
Sbjct:  206 GKAENTFTDPIDYIN-FQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG-----INCLVAFEEMRVENPLGKLISMAGFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILD 415          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 50/184 (27.17%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  130 IVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            + +GD+++ FNFR DR   L+      +   +      +I  +  +++Y+G   + S       E+    G+ L  N ++    +ET K+ HVTFF++G     + +  E  + + S    +F   P M A EI +     I    F  + +N  N DMVGHTG++ AT+ A +  D   + I+
Sbjct:  241 VKNGDSIIFFNFRPDRARQLSHMFIGSNLYTYKPKNQVQIDNFVSLMKYEG---INSKIAFKEMEVVNPLGKVLESNDIKQLRLAETQKYAHVTFFFDGGVDIEYKN--ENRILVDSLKVDSFADYPHMSAKEITDSLLNNIEKNDF--IIMNYANPDMVGHTGNLNATIEAIEFLDSQFQRIL 417          
The following BLAST results are available for this feature:
BLAST of FC930478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
GPMI_HELPY3.751e-1630.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ3.751e-1629.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELAH3.751e-1631.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGA4.899e-1629.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPE3.176e-1529.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH21.475e-1227.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU3.286e-1226.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHJ4.292e-1226.872,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH74.292e-1226.872,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHP2.782e-1127.172,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34008A03EF PostHarvC1 Citrus clementina cDNA clone C34008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930478 ID=FC930478; Name=FC930478; organism=Citrus clementina; type=EST; length=684bp
GGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACT
AAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATTG
TTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGTT
GTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCCT
TGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATCC
GTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCAT
TACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAATATTTAGT
GCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGAC
ATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAAT
TTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGT
ACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAGAGGGCAAAGAAGGCCA
TCCTTAGTCGCAGGTTCCACCAGGTACGTGTTAACCTACCAAATAGTGAC
ATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGC
TGCTGATGAAGCTGTCAAGATAATCATTNGATGC
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