FC930482

Overview
NameFC930482
Unique NameFC930482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 71/223 (31.84%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   99 PREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ-----TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWV 731
            P E T     RA +AEFI+T +F++    + M    +  +                            ISGGH+NPAVTFG F+   +SL R I Y + Q+LG+     ++K     Q        A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V      W++HW++WV
Sbjct:   45 PSELTSWSFYRAGIAEFIATFLFLYITVLTVMGV--VRESSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWV 264          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 71/215 (33.02%), Postives = 102/215 (47.44%), Query Frame = 3
Query:  129 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG-----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV-----SWSWDNHWVYWV 731
            RAA+AEF +TL+ V     + +   + +  G    +                      ISGGH+NPAVTF   +   +SL R  LY +AQ +G+     L + +  G         A  L++G  A   VV E+V TF LVYTV+ +A DPK+      +  +AP+ IG  V    LA     G  +NPA S GPALV     + +W + W++WV
Sbjct:   35 RAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWV 245          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 71/205 (34.63%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  129 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG---QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIA-IGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            +A  AEF++T ++VF G GS + +          PS                       SG H NPAVT    VG +ISL R + Y  AQL G+T    LL  VT G   +T     + +      AV  E+V+T  LV  V+A+      G     +P A IG  V    L G  F G SMNPA SFGPA++   +  HW++WV
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLPWP------VALPSVLQIAITFNLATATAVQISWKT-SGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFAS----MDGRQTLASPAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWV 215          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 68/207 (32.85%), Postives = 95/207 (45.89%), Query Frame = 3
Query:  129 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKF---VTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAL----DPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYW 728
            R  LAEF  TL  V+   GS +A N      ++                         ISG  +NPAVT G    G + +L GI + I Q +G+ V   ++K        +  SA  L++GV        E+V T  LV+ V   A+    DPK   +  +AP+AIG  V A +     F G S+NPA SFGPA+ S +W  H++YW
Sbjct:   32 RQLLAEFFGTLFVVYIVSGSTLAANFAV---SDPIVRVCLICLVQGFAFAAIIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYERDLSATTLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPK---ISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVFSDTWHRHYIYW 232          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 3
Query:   99 PREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWV 731
            P E +     RA +AEF++T +F++    + M   +   +   +                        ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K    G        A  ++ G    + +  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +W++HW++WV
Sbjct:   43 PGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKR--SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWV 261          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 60/210 (28.57%), Postives = 102/210 (48.57%), Query Frame = 3
Query:  117 PDALRAALAEFISTLIFVFAGEG----SGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA-WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            P  L+  ++E ++T + VF   G    SG   ++++  G +                        +ISG H+NPAVT    V  +   ++   YW AQ  G+  A  +LK V +         ++ VG  W+++V E+++TF +++   A A D +  ++G +A +A+G  V    +  GA  G SMNPA + GPAL S  +D  W+Y++
Sbjct:   45 PHLLKKVVSEVVATFLLVFMTCGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVG---------HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIH--PVDVIGTTTPVGPHWHSLVVEVIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNKFDGLWIYFL 241          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 65/200 (32.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:  126 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVY 725
            L+  +AE + T   +FAG  S +  N+  +N    P                      +ISGGH NPAVT          L++   Y +AQLLGS +A   L+ +  G                A VFE +MTF L++ +   A D +  ++G  A IAIG  +  N++ GG   GASMNPA S GPA V   ++  W+Y
Sbjct:   37 LQKLVAEAVGTYFLIFAGCAS-LVVNENYYNMITFPGIAIVWGLVLTVLVYTVG----HISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNR--AVGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGEYEGIWIY 229          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 65/212 (30.66%), Postives = 98/212 (46.23%), Query Frame = 3
Query:  129 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWV 731
            RA +AEF++T +F++    + M  +K                                +SGGH+NPAVTFG  +   +SL R + Y + Q LG+     ++K   +    S    A A+S G    + +  E+V TF LVYTV+ +A D K+      +  +AP+ IGF V    LA     G  +NPA S G A++      W  HW++WV
Sbjct:   60 RAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTV--GIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVF-SATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWV 268          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 66/202 (32.67%), Postives = 92/202 (45.54%), Query Frame = 3
Query:  138 LAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSA------FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVY 725
            LAE + T   +FAG G+ +  N+ T      P                      +ISG H NPAVT      G     +   Y +AQ+LGST+A L L+ V  G    A      F  +       A   E V++F L++ V   A D +  ++G +A +A+G  V  N+L  G   GASMNPA S GPA+V+  +   WVY
Sbjct:   67 LAEILGTYFMIFAGCGA-VVVNQSTGGAVTFPGICAVWGLVVMVLVYTVS----HISGAHFNPAVTVAFATCGRFRWKQVPSYVVAQVLGSTMASLTLRVVFGGGGGGARGEHLFFGTTPAGSMAQAAALEFVISFFLMFVVSGVATDNR--AIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVY 261          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 60/209 (28.71%), Postives = 99/209 (47.37%), Query Frame = 3
Query:  117 PDALRAALAEFISTLIFVFAGEGS----GMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            P  L+  ++E +ST + VF   G+    G   ++++  G +                        +ISG H+NPAVT    V  +   ++   YW AQ  GS  A  +LK V +          +G   W+++V EI++TF +++   A A D +  ++G +A +A+G  V    +  GA  G SMNPA + GPAL S  +   W+Y++
Sbjct:   43 PHLLKKVVSEVVSTFLLVFVTCGAAGIYGSDKDRISQLGQSVAGGLIVTVMIYAVG---------HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGSICASFVLKAVLHPIAVLGTTTPTGPH-WHSLVIEIIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASNLYTGLWIYFL 239          
The following BLAST results are available for this feature:
BLAST of FC930482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
PIP2_PEA9.021e-1931.84Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP28_ORYSJ1.178e-1833.02Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
AQP6_MOUSE1.178e-1834.63Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
AQPB_DICDI3.428e-1832.85Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
PIP1_SOLLC4.477e-1829.73Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
NIP21_ORYSJ5.847e-1828.57Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
NO26_SOYBN7.637e-1832.50Nodulin-26 OS=Glycine max PE=1 SV=2[more]
PIP16_MAIZE9.974e-1830.66Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
NIP12_ORYSJ9.974e-1832.67Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP21_MAIZE3.790e-1728.71Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34008A07EF PostHarvC1 Citrus clementina cDNA clone C34008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930482 ID=FC930482; Name=FC930482; organism=Citrus clementina; type=EST; length=733bp
GAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAATCTT
CATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCC
CCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCA
TCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTC
AACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGC
CTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCA
ACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTT
GGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCT
TCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCC
AGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAACGCA
GTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGTATGC
CACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCAATTG
CAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTTTGAT
GGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAAGCTG
GAGCTGGGACAACCACTGGGTCTACTGGGTCGG
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