FC930482

Overview
NameFC930482
Unique NameFC930482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 64/202 (31.68%), Postives = 94/202 (46.53%), Query Frame = 3
Query:  126 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            L+  +AE I T   +FAG GS +A NK+ +     P                       ISG H NPAVT    + G     +  LY IAQL+GS +A   L  + +    + F          ++  EI+++F L++ +   A D +  ++G +A IA+G  +  N+   G   GASMNPA S GPA+V   +   WVY V
Sbjct:   42 LQKLIAEAIGTYFVIFAGCGS-VAVNKI-YGSVTFPGICVTWGLIVMVMVYTVGY----ISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSNGQSLAIEIIISFLLMFVISGVATDDR--AIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKHVYTGLWVYVV 235          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  300 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            +ISG H NPAVT      G     +   Y +AQ+LG+T+A   L+ +  G+               ++V EI+ TF L++ +   A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPALVS  + + WVY V
Sbjct:   96 HISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGEYTSIWVYVV 237          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.457e-16
Identity = 59/196 (30.10%), Postives = 87/196 (44.39%), Query Frame = 3
Query:  138 LAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVY 725
            +AE + T   +FAG  + +A NK T      P                      +ISG H+NPAVT      G     R   Y  AQ+ GS  A   L+ +  G     F  +       ++  E ++TF L++ V   A D +  ++G +A +A+G  V  N+L  G   GASMNPA + GPA++   +   WVY
Sbjct:   57 IAEILGTFFLIFAG-CAAVAVNKRTGGTVTFPGICITWGLAVMVMVYSVG----HISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVATDNR--AIGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGRYTGIWVY 245          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 66/214 (30.84%), Postives = 100/214 (46.73%), Query Frame = 3
Query:  129 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWV 731
            R  +AEF++T +F++    + M  +K T   A                         +   GH+NPAVTFG F+   +SL R + Y I Q LG+     ++K      ++ NG   +  A   G    + +  EIV TF LVYTV+ +A D K+      +  +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WV
Sbjct:   54 RPGIAEFVATFLFLYISILTVMGVSKSTSKCATVGIQGIAWSFGGMILALVYCTAGIS---GHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVA--PGYTKGDGLGAEIVGTFILVYTVF-SATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWV 261          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 53/144 (36.81%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  300 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            +ISG H NPAVT    V       +  LY  AQL GS +A L L+ + N    + F  +    +  A+V EI+++F L++ +   A D +  + G +A IA+G  +  N+   G   GASMNPA S GPA+V   +   WVY V
Sbjct:   95 HISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIV 236          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 63/206 (30.58%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  129 RAALAEFISTLIFVF--AGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYW 728
            R+ ++E +++ ++VF   G  +G+        GA+  S                     +ISG H+NPAVT    V  +IS +R  +Y  AQ  G      LL  VT     G   +A + S+ + AW     E ++TF LV   Y  + DP K  +G  A  +IG    A       +    +NPA S GP+ V   WD+HWVYW
Sbjct:   66 RSIISECLASFMYVFIVCGAAAGVGV------GASVSSVLLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTF-LVVLCYFVSTDPMKKFMGNSAA-SIGCAYSACCFVSMPY----LNPARSLGPSFVLNKWDSHWVYW 259          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 67/210 (31.90%), Postives = 95/210 (45.24%), Query Frame = 3
Query:  126 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKF-------VTNGQTTSAFALSSGVGA-WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            L+  +AEF+ T   VF G  S +  N    N    P                      +ISG H+NPAVT      G   L +   Y I+Q++GST+A   L+        V +G+    F  SS VG+   A   E ++TF L++ +   A D +  ++G +A +AIG  V  N+L       ASMNP  S GPALV   +   W+Y V
Sbjct:   54 LQKLIAEFLGTYFLVFTGCAS-VVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLG----HISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKH-DVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNR--AIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYGCYKGIWIYLV 255          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 61/198 (30.81%), Postives = 90/198 (45.45%), Query Frame = 3
Query:  138 LAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            +AE I T   VF+G   G+    + + G  T                       +ISG H NPAVT    +       +  LY  AQ  GS +A L L+ +      + F  +       A+V EI+++F L++ +   A D +  ++G +A IA+G  +  N+   G   GASMNPA S GPALV   + + WVY V
Sbjct:   46 IAEMIGTYFIVFSG--CGVVVVNVLYGGTIT---FPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFGTTPADSPARALVAEIIISFLLMFVISGVATDNR--AVGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIV 236          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 63/195 (32.31%), Postives = 89/195 (45.64%), Query Frame = 3
Query:  141 AEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVY 725
            AEF+ TLI +FAG  + +   K   +GA T                       +ISG H+NPAVT       +       +Y  AQ++ S  A   LK V    T S       VG   A   E +++F L++ V A A D +  ++G +A IA+G  V  NIL  G    ASMNP  + GPA+ + ++   WVY
Sbjct:   84 AEFVGTLILIFAGTATAIVNQKT--DGAET---LIGCAASAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFE-PTMSGGVTVPTVGLSQAFALEFIISFNLMFVVTAVATDTR--AVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVY 270          
BLAST of FC930482 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  300 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWV 731
            +ISG H+NPAVT       +   ++   YW AQ  G+  A  +LK V +          SG   W+A++ EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++
Sbjct:  104 HISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLHPIAVIGTTTPSGPH-WHALLIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFL 244          
The following BLAST results are available for this feature:
BLAST of FC930482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
NIP1_NICAL8.443e-1731.68Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP11_MAIZE1.881e-1636.11Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP13_ORYSJ2.457e-1630.10Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
PIP11_MAIZE3.208e-1630.84Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
NIP42_ARATH4.190e-1636.81Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
BIB_DROME7.148e-1630.58Neurogenic protein big brain OS=Drosophila melanog... [more]
NIP11_ARATH2.080e-1531.90Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP41_ARATH3.547e-1530.81Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP61_ARATH7.903e-1532.31Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
NIP22_MAIZE1.032e-1432.64Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34008A07EF PostHarvC1 Citrus clementina cDNA clone C34008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930482 ID=FC930482; Name=FC930482; organism=Citrus clementina; type=EST; length=733bp
GAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAATCTT
CATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCC
CCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCA
TCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTC
AACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGC
CTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCA
ACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTT
GGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCT
TCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCC
AGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAACGCA
GTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGTATGC
CACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCAATTG
CAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTTTGAT
GGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAAGCTG
GAGCTGGGACAACCACTGGGTCTACTGGGTCGG
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