FC930492

Overview
NameFC930492
Unique NameFC930492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1_SOYBN (Alternative oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.570e-63
Identity = 111/142 (78.17%), Postives = 130/142 (91.55%), Query Frame = 3
Query:    6 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            KALLEEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YLLSPK AHR+ GYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDYW+LP  +TL+DV+ V+RADEAHHRDVNHFASDI +QG+ELR+A AP+GYH
Sbjct:  180 KALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX1_SAUGU (Alternative oxidase, mitochondrial OS=Sauromatum guttatum GN=AOX1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.794e-63
Identity = 110/143 (76.92%), Postives = 130/143 (90.91%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 431
            I+ALLEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE+LKDIDSG+I++ PAPAIA+DYWRLP+ +TL+DV+TV+RADEAHHRDVNHFASD+ +Q  EL+  PAPLGYH
Sbjct:  207 IRALLEEAENERMHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDCPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_CRYNV (Alternative oxidase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=AOX1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 73/129 (56.59%), Postives = 99/129 (76.74%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 380
            I +LLEEAENERMHL+T + + +P  + R LVL  QGVF+NAFF+ YL+SP++AHR VG LEEEA+ +YT  + D+++G I   +++PAPAIAIDYWRLP  ++L DVI  +RADEA HR VNH  +++
Sbjct:  220 IHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRLPASSSLLDVIRAVRADEATHRFVNHSLANL 348          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_EMENI (Alternative oxidase, mitochondrial OS=Emericella nidulans GN=alxA PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.979e-35
Identity = 67/131 (51.15%), Postives = 99/131 (75.57%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 383
            I+ LLEEA NERMHL+T +++ +P W+ R++VL  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +   E + AP IA+ YW++P+ + T+KD++  +RADEA HR+VNH   +++
Sbjct:  186 IETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVKYWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNLK 316          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_ASPNG (Alternative oxidase, mitochondrial OS=Aspergillus niger GN=aox1 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.173e-34
Identity = 67/125 (53.60%), Postives = 96/125 (76.80%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNH 365
            I+ LLEEA NERMHL+T ++L +P W+ R++VL  QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  +K+I++GS+   E   AP IA+ YW++P+   ++KD++  +RADEA HR+VNH
Sbjct:  183 IETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQYWKMPEGQRSMKDLLLYVRADEAKHREVNH 307          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_AJECA (Alternative oxidase, mitochondrial OS=Ajellomyces capsulata GN=AOX1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 68/131 (51.91%), Postives = 98/131 (74.81%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 383
            I+ LLEEA NERMHL++ ++L +P W+ R++VL  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +    N PAP IA+ YW++P+   T+ D++  IRADEA HR+VNH  ++++
Sbjct:  188 IETLLEEAYNERMHLLSFLKLAQPGWFMRLMVLGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDIAVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANLK 318          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_PODAN (Alternative oxidase, mitochondrial OS=Podospora anserina GN=AOX1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.171e-32
Identity = 63/132 (47.73%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDI 380
            I+ LLEE+ NERMHL+T +++ +P W+ + ++L  QGVFFNA F+ YL+SP++ HR VGYLEEEA+H+YT  +++I+ G +      N   P +A+ YW++P+   T++D+I  IRADEA HR VNH  S++
Sbjct:  194 IETLLEESYNERMHLLTFMKMCEPGWFMKTMILGAQGVFFNAMFLSYLISPRITHRFVGYLEEEAVHTYTRCIREIEQGDLPKWSDPNFQIPDLAVTYWKMPEGKRTMRDLILYIRADEAVHRGVNHTLSNL 325          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_VENIN (Alternative oxidase, mitochondrial OS=Venturia inaequalis GN=AOX1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-31
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNH 365
            I+ LLEE+ NERMHL+  ++L +P W+ R+ VL  QGVFFNA F+ YL+SP+  HR VGYLEEEA+ +YT  L D+++G +   E + AP IA+DY+ LP+   T+KD++  +RADEA HR+VNH
Sbjct:  193 IETLLEESYNERMHLLIFLKLYEPGWFMRLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLAAPDIAVDYYNLPEGHRTMKDLLLHVRADEAKHREVNH 317          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_NEUCR (Alternative oxidase, mitochondrial OS=Neurospora crassa GN=aod-1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.612e-31
Identity = 67/132 (50.76%), Postives = 93/132 (70.45%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SIENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDI 380
            I+ LLEE+ NERMHL+T +++ +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G     S E    P +A+ YWR+P+   T+KD+I  IRADEA HR VNH  S++
Sbjct:  192 IETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEGHLPKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL 323          
BLAST of FC930492 vs. ExPASy Swiss-Prot
Match: AOX_GELSS (Alternative oxidase, mitochondrial OS=Gelasinospora sp. (strain S23) GN=aod-1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.023e-31
Identity = 67/132 (50.76%), Postives = 93/132 (70.45%), Query Frame = 3
Query:    3 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SIENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDI 380
            I+ LLEE+ NERMHL+T +++ +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G     S E    P +A+ YWR+P+   T+KD+I  IRADEA HR VNH  S++
Sbjct:  192 IETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIREIEEGHLPKWSDERFEIPEMAVRYWRMPEGKRTMKDLIYYIRADEAVHRGVNHTLSNL 323          
The following BLAST results are available for this feature:
BLAST of FC930492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AOX1_SOYBN1.570e-6378.17Alternative oxidase 1, mitochondrial OS=Glycine ma... [more]
AOX1_SAUGU7.794e-6376.92Alternative oxidase, mitochondrial OS=Sauromatum g... [more]
AOX_CRYNV3.646e-3656.59Alternative oxidase, mitochondrial OS=Cryptococcus... [more]
AOX_EMENI8.979e-3551.15Alternative oxidase, mitochondrial OS=Emericella n... [more]
AOX_ASPNG1.173e-3453.60Alternative oxidase, mitochondrial OS=Aspergillus ... [more]
AOX_AJECA2.613e-3451.91Alternative oxidase, mitochondrial OS=Ajellomyces ... [more]
AOX_PODAN4.171e-3247.73Alternative oxidase, mitochondrial OS=Podospora an... [more]
AOX_VENIN1.214e-3152.80Alternative oxidase, mitochondrial OS=Venturia ina... [more]
AOX_NEUCR4.612e-3150.76Alternative oxidase, mitochondrial OS=Neurospora c... [more]
AOX_GELSS6.023e-3150.76Alternative oxidase, mitochondrial OS=Gelasinospor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008B05EF PostHarvC1 Citrus clementina cDNA clone C34008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930492 ID=FC930492; Name=FC930492; organism=Citrus clementina; type=EST; length=732bp
GGATCAAAGCTCTGCTTGAAGAAGCAGAGAATGAGAGGATGCATCTGATG
ACCATGGTGGAGCTTGTGAAGCCCAAATGGTATGAGAGGATGCTTGTTCT
GACTGTGCAGGGTGTCTTTTTCAATGCATTCTTTGTGCTTTATCTACTCT
CACCTAAACTGGCTCATAGAGTTGTTGGCTACTTGGAGGAGGAGGCTATA
CACTCTTACACTGAATATCTCAAGGATATTGATAGTGGATCTATTGAAAA
TGTTCCAGCCCCTGCTATTGCTATTGACTATTGGAGGTTACCTAAGGATG
CTACACTCAAGGATGTTATTACTGTTATTCGTGCTGACGAAGCTCATCAT
CGGGATGTCAACCATTTTGCTTCTGATATACAGTTTCAGGGGAAGGAATT
AAGAGATGCTCCTGCCCCTCTTGGTTACCACTGAGATGGGATGAATTTGA
GATTGTTTGTCAGATTTGTGGTTGAGGTACTTCTACATGGATTGGTCTGA
GATAATGAGGTTTCTGTATATGCTGAGAATAGTACACTAGGAGTATGAAA
TCTCAAGCTAAATGAAAAAGGGGTATAGAGTTTTCTGTATATGCTGAGAA
TAGTACACTAGGAGTATGAAGTGTCAAGCTAAATGAAAAAGGGGTATAGA
CTAAATAAACACATCTGACTTTCTAAACCCAATTTGGTTGAATTTTATAA
GCTTTGAGATTAGACTGCTTTTGTTTCTGTAT
back to top