FC930499

Overview
NameFC930499
Unique NameFC930499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFA (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa GN=ubiB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAP 629
            VP V W +TA +VLTLE + G+  +++  LD  G +R  ++S+ I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   + P   +  +  + +   +   ++ P  Q +LA +   LF +A+            + +     EG+G  LDP+     VA P
Sbjct:  224 VPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_NEIMA (Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup A GN=ubiB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 57/210 (27.14%), Postives = 100/210 (47.62%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            F N   L VP VF+DY  + VLT+E++ G  + ++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V  D   I  DFG++G +  + +  L   F A + +D ++V    I+   +        +  +V+   + + ++ P  Q +   +   LF +++            + +     EG+G  LDPD    K A P+
Sbjct:  215 FHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNK-PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPF 423          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFM (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M12) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 58/207 (28.02%), Postives = 102/207 (49.28%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAP 629
            VP V W +TA +VLTLE + G+  +++  LD  G +R  ++S+ I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  Q +LA +   LF +A+            + +     EG+G  LDP+     VA P
Sbjct:  224 VPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPQHVRIEELEAAARSVCEPYFTR-PLSQISLAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURPS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURP6 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURP1 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURP0 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURMS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain SAVP1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURMA (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BURM9 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 61/220 (27.73%), Postives = 104/220 (47.27%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F  +  L VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +     EG+G  LDP+    K A PY +
Sbjct:  217 FAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
The following BLAST results are available for this feature:
BLAST of FC930499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
UBIB_XYLFA4.427e-2128.50Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_NEIMA4.427e-2127.14Probable ubiquinone biosynthesis protein ubiB OS=N... [more]
UBIB_XYLFM2.869e-2028.02Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_BURPS2.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP62.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP12.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP02.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURMS2.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURMA2.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURM92.869e-2027.73Probable ubiquinone biosynthesis protein ubiB OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC34008B12EF PostHarvC1 Citrus clementina cDNA clone C34008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930499 ID=FC930499; Name=FC930499; organism=Citrus clementina; type=EST; length=742bp
ATTTTCGGAATATAAAGTGGCTCCGGGTACCTCTGGTGTTTTGGGATTAT
ACTGCTACAAAGGTGTTGACATTGGAGTATGTACCAGGAGTTAAGATCAA
TGAGTTGAAAGCACTAGATTTGCAGGGTTATAATCGTTCTCAAATTGCAT
CGCGTGCAATTGAAGCGTACTTGAATCAGATACTCAAAACTGGTTTCTTT
CATGCTGATCCTCATCCTGGAAATCTTGCTGTCGATTTAGATGAAGCACT
CATCTATTATGATTTTGGTATGATGGGGGAGATTAAATCCTTTACCCGTG
AAAGATTGCTTGATCTTTTCTATGCAGTTTATGAGAAAGATGCCAAAAAG
GTTATCCAAAGGTTGATTGATCTCGAAGCACTTCAACCCACAGGAGATAT
GTCATCGGTAAGGAGATCCGTGCAATTTTTCTTGGACAATTTGCTAAGCC
AGAGTCCAGATCAGCAGCAGACTTTGGCTGCAATTGGAGAGGATTTGTTT
GCAATAGCTCAAGATCAACCATTTCGGTTTCCATCCACCTTTACTTTCGT
TATAAGGGCATTCTCCACACCTGAAGGTATCGGCAACATTCTTGACCCAG
ATTTTTCCTTTGTGAAGGTTGCTGCACCTTATGCACAGGAGCTATTGGAT
TTAAACAGCAGCAGCAGTCTGGAACACAGCTAGTGGAAGCAATCAGGGAA
ACAGCTGATGATGCCAGATCTTTCGACATGTCCATGCCATCC
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