FC930499

Overview
NameFC930499
Unique NameFC930499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: ADCK5_MOUSE (Uncharacterized aarF domain-containing protein kinase 5 OS=Mus musculus GN=Adck5 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    6 RNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAV----DLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKD 341
            ++  ++ +P V WD ++ +VLT ++  G K+N+++ +  QG     +A + I+ +  QI  TGF H+DPHPGN+ V    D    L+  D G+   +    R  L  L+ A+  +D
Sbjct:  293 KHFHYVVIPRVHWDRSSKRVLTADFCNGCKVNDMEGIKSQGLAVQDVAKKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRD 408          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_HAEPS (Probable ubiquinone biosynthesis protein ubiB OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 44/217 (20.28%), Postives = 97/217 (44.70%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            F N + L VP ++ ++    V+ +E + G+ +  +  L   G +   +A R ++ +  Q+ +  FFHAD HPGN+ V+ +       I  D G++G +    +  L + F A + +D ++V    ++        D+ +   + +   + + ++ P  + +   +  +LF +A+            + +     EG+G  + P     + A P+ Q+
Sbjct:  223 FENSEMLYVPEMYQEFCHKNVIVMERIYGIPVANIDELKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVNPNHPENPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESGWTPADTDIDAFEEAFREVCEPIFAK-PLSEISFGHVLLNLFTVARKFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQD 438          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ACTP7 (Probable ubiquinone biosynthesis protein ubiB OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ubiB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 44/216 (20.37%), Postives = 100/216 (46.30%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F N + L VP ++ D+    V+ +E + G+ +++++ L   G +   +A R ++ +  Q+ +  FFHAD H GN+ V+ +       I  D G++G +    +  L + F A + +D ++V    ++        D+ +  ++ +   + + ++ P  + +   +  +LF +A++           + +     EG+G  + P     + A P+ Q
Sbjct:  223 FENSEMLYVPEMYPDFCHKNVIVMERIYGILVSDVETLKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHAGNIFVNPNHPENPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESGWTPADTDIDAFEQAFREVCEPIFAK-PLSEISFGHVLLNLFNVAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQ 437          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_HAHCH (Probable ubiquinone biosynthesis protein ubiB OS=Hahella chejuensis (strain KCTC 2396) GN=ubiB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 49/216 (22.69%), Postives = 94/216 (43.52%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + + +P V+W+ T ++VL +E + GV I +++ L     N   +A R +E +  Q+ +  FFHAD HPGN+ VD+    +   I  D G++G +    +  L     A + +D ++V    I    +     ++    +++   + +  + P +  +       LF  A+            + +     EG+G  L PD      A P+ +
Sbjct:  216 FAGSELIYIPEVYWEMTHSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAVLHISSGWVPGHTRVNEFEAAIRTVCEPIF-ERPLKDISFGQFLMRLFQTARRFDMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFLE 430          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ACTPJ (Probable ubiquinone biosynthesis protein ubiB OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ubiB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 44/216 (20.37%), Postives = 100/216 (46.30%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F N + L VP ++ D+    V+ +E + G+ +++++ L   G +   +A R ++ +  Q+ +  FFHAD H GN+ V+ +       I  D G++G +    +  L + F A + +D ++V    ++        D+ +  ++ +   + + ++ P  + +   +  +LF +A++           + +     EG+G  + P     + A P+ Q
Sbjct:  223 FENSEMLYVPEMYPDFCHKNVIVMERIYGIPVSDVETLKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHAGNIFVNPNHPENPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESCWTPADTDIDAFEQAFREVCEPIFAK-PLSEISFGHVLLNLFNVAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQ 437          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_VIBSL (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio splendidus (strain LGP32) GN=ubiB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 46/216 (21.30%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + L VP V  D ++  ++  E + G+++++++ L+  G N   +A R +  +  Q+ +  FFHAD HPGN+ V+ +       I  D G++G + S  +  L +   A + +D +KV +  +D   +    +++    +++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P       A P+ +
Sbjct:  219 FEGSEELYVPEVIPDLSSETLMVSERIYGIQVSDIETLEANGTNMKLLAERGVTVFFTQVFRDSFFHADMHPGNVFVNPENPDNPQWIGLDCGIVGTLNSEDKRYLAENLLAFFNRDYRKVAELHVDSGWVPHDTNVNDFEFAIRMVCEPIFAK-PLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWATAKPFLE 433          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ALISL (Probable ubiquinone biosynthesis protein ubiB OS=Aliivibrio salmonicida (strain LFI1238) GN=ubiB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 47/216 (21.76%), Postives = 95/216 (43.98%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + L VP V  D ++  ++  E + G+++++++ L+  G N   +A R +  +  Q+ +  FFHAD HPGN+ V+ D       I  D G++G +    +  L +     +  D +KV Q  ID   +    ++     +++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P       A P+ +
Sbjct:  219 FEGSEELYVPEVILDVSSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDYRKVAQLHIDSGWVPAETNVEEFEFAIRIVCEPIFAK-PLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWATAKPFLE 433          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_BLOPB (Probable ubiquinone biosynthesis protein ubiB OS=Blochmannia pennsylvanicus (strain BPEN) GN=ubiB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 50/216 (23.15%), Postives = 95/216 (43.98%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F+  + L +P V+ D+ +  V+ +E + G+ +  L AL  Q  N   +A R IE +  Q+ +  FFH D HPGN+ +      +   I  D G++G +    +  L   F A +  D +K+ +  +D   +    ++     +++   + +  Q P ++   + I   LF  A+            + +     EGI   L P+ +  K A P+ +
Sbjct:  219 FKKSQILYIPKVYVDFCSENVMVMERIYGIPVYNLVALKKQKTNMKLLAERGIEIFFTQVFRDSFFHGDMHPGNIFISYKHPGNPKYISVDCGIVGSLNKKDKYYLAANFIAFFNHDYRKIAELHLDSGWIPLDTNIEDFECAMRTVFEPIFEQ-PLEKIPFSKILLYLFNTARYFNMEIQPQLILLQKTLLYIEGIVRQLYPNLNLWKSAQPFLE 433          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_VIBFM (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio fischeri (strain MJ11) GN=ubiB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 46/216 (21.30%), Postives = 94/216 (43.52%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + L VP V  D ++  ++  E + G+++++++ L+  G N   +A R +  +  Q+ +  FFHAD HPGN+ V+ D       I  D G++G +    +  L +     +  D  KV Q  +D   +    ++     +++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P       A P+ +
Sbjct:  219 FEGSEELYVPEVILDLSSEHLMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVPADTNVEEFEFAIRMVCEPIFAK-PLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWATAKPFLE 433          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_VIBF1 (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 46/216 (21.30%), Postives = 94/216 (43.52%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + L VP V  D ++  ++  E + G+++++++ L+  G N   +A R +  +  Q+ +  FFHAD HPGN+ V+ D       I  D G++G +    +  L +     +  D  KV Q  +D   +    ++     +++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P       A P+ +
Sbjct:  219 FEGSEELYVPEVILDLSSEHLMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPDNPENPQWIGLDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVPADTNVEEFEFAIRMVCEPIFAK-PLGEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWATAKPFLE 433          
The following BLAST results are available for this feature:
BLAST of FC930499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ADCK5_MOUSE7.569e-1331.03Uncharacterized aarF domain-containing protein kin... [more]
UBIB_HAEPS2.876e-1220.28Probable ubiquinone biosynthesis protein ubiB OS=H... [more]
UBIB_ACTP72.876e-1220.37Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_HAHCH3.756e-1222.69Probable ubiquinone biosynthesis protein ubiB OS=H... [more]
UBIB_ACTPJ3.756e-1220.37Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_VIBSL8.368e-1221.30Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_ALISL1.093e-1121.76Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_BLOPB2.435e-1123.15Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_VIBFM3.180e-1121.30Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_VIBF13.180e-1121.30Probable ubiquinone biosynthesis protein ubiB OS=V... [more]

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Properties
Property NameValue
Genbank descriptionC34008B12EF PostHarvC1 Citrus clementina cDNA clone C34008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930499 ID=FC930499; Name=FC930499; organism=Citrus clementina; type=EST; length=742bp
ATTTTCGGAATATAAAGTGGCTCCGGGTACCTCTGGTGTTTTGGGATTAT
ACTGCTACAAAGGTGTTGACATTGGAGTATGTACCAGGAGTTAAGATCAA
TGAGTTGAAAGCACTAGATTTGCAGGGTTATAATCGTTCTCAAATTGCAT
CGCGTGCAATTGAAGCGTACTTGAATCAGATACTCAAAACTGGTTTCTTT
CATGCTGATCCTCATCCTGGAAATCTTGCTGTCGATTTAGATGAAGCACT
CATCTATTATGATTTTGGTATGATGGGGGAGATTAAATCCTTTACCCGTG
AAAGATTGCTTGATCTTTTCTATGCAGTTTATGAGAAAGATGCCAAAAAG
GTTATCCAAAGGTTGATTGATCTCGAAGCACTTCAACCCACAGGAGATAT
GTCATCGGTAAGGAGATCCGTGCAATTTTTCTTGGACAATTTGCTAAGCC
AGAGTCCAGATCAGCAGCAGACTTTGGCTGCAATTGGAGAGGATTTGTTT
GCAATAGCTCAAGATCAACCATTTCGGTTTCCATCCACCTTTACTTTCGT
TATAAGGGCATTCTCCACACCTGAAGGTATCGGCAACATTCTTGACCCAG
ATTTTTCCTTTGTGAAGGTTGCTGCACCTTATGCACAGGAGCTATTGGAT
TTAAACAGCAGCAGCAGTCTGGAACACAGCTAGTGGAAGCAATCAGGGAA
ACAGCTGATGATGCCAGATCTTTCGACATGTCCATGCCATCC
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