FC930499

Overview
NameFC930499
Unique NameFC930499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_KLEP3 (Probable ubiquinone biosynthesis protein ubiB OS=Klebsiella pneumoniae (strain 342) GN=ubiB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 52/216 (24.07%), Postives = 102/216 (47.22%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L VP V+ DY +  ++ +E + G+ +++++AL+ QG N   +A R ++ +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYVPEVYPDYCSESMMVMERIYGIPVSDVEALEAQGTNMQLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_DELAS (Probable ubiquinone biosynthesis protein ubiB OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 50/209 (23.92%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   27 VPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            +P V+WD+  + V+ ++ + GV I++++ L   G +  ++A   +  +  Q+ + GFFHAD HPGN+ V L+       I  DFG++G +  + +E L   F A + +D K+V +  I+   + P+  +  +  +++   +    + P  + +L  +   LF  ++            + +     EG+G  LDP+      A P+ ++
Sbjct:  226 IPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWVPPSTRVDELEAAIRAVCEPYFDR-PLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLEK 433          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_CHRVO (Probable ubiquinone biosynthesis protein ubiB OS=Chromobacterium violaceum GN=ubiB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 53/210 (25.24%), Postives = 99/210 (47.14%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPY 632
            F+    L VP VF+DY++ +VLTLE++ G+ + +++ L   G +  +++   +E +  Q+ + GFFHAD HPGN+ V  D   I  DFG++G +    +  L   F A + +D  +V    I+   +        +  +V+   + +  + P  + +   +   LF  ++            + +     EG+G  LDP+      A P+
Sbjct:  218 FKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEELEAAVRTVCEPIF-EKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: Y647_MYCTU (Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium tuberculosis GN=Rv0647c PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 58/196 (29.59%), Postives = 96/196 (48.98%), Query Frame = 3
Query:   15 KWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYA-VYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDP 599
            K +RVP V WD+T  +VLT+E V G++I+   A+   G++  ++    + +     L+ G FH D H GNL VD    ++++DFG+MG I   TR  L +L YA + +KD     + ++ + A+      +   + ++ F   L  QS     + A IG  L A+A     + P     + + F   E    +L P
Sbjct:  263 KNIRVPQVHWDFTTERVLTMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNLYVDEAGRIVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKPETQAAKDLERFATPLTMQSLG-DMSYADIGRQLSALADAYDVKLPRELVLIGKQFLYVERYMKLLAP 457          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_RALSO (Probable ubiquinone biosynthesis protein ubiB OS=Ralstonia solanacearum GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 58/220 (26.36%), Postives = 102/220 (46.36%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL-DEAL---IYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL----EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + L VP VFWD+  ++V  +E + GV+++    L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V +  E+L   I  DFG++G +  F +  L   F A +++D  +V    ++     E  +      ++R   + + D  L +      +L  +   LF  ++            + +     EG+G  LDPD    K A P+ +
Sbjct:  218 FAKSELLLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGWAPEETRVEELEGAIRACCEPYFDRPLGEI-----SLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPFLE 432          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SODGM (Probable ubiquinone biosynthesis protein ubiB OS=Sodalis glossinidius (strain morsitans) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 51/211 (24.17%), Postives = 99/211 (46.92%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L +P V+ DY +  ++ +E + GV +N++ AL+ QG N   +A R ++ +  Q+ +  FFH D HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +E
Sbjct:  224 LYIPEVYPDYCSETMMVMERIYGVPVNDVAALEKQGTNMKLLAERGVQVFFTQVFRDSFFHGDMHPGNIFVSFEHPENPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLEE 433          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHEHH (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 50/211 (23.70%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L +P ++ +   T+++ +E + G+ +++  AL+ QG N   +A R +E +  Q+ +  FFHAD HPGN+ V      D   I  D G+MG +    +  L + F A + +D +++ Q  I+   + P  D+++  ++V+   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYIPYMYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIESGWVSPDTDVAAFEQAVKVVCEPMFNK-PLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHESW (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain W3-18-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 50/217 (23.04%), Postives = 102/217 (47.00%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            F N   L VP V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  219 FLNSDALYVPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARSFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHEPC (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 50/217 (23.04%), Postives = 102/217 (47.00%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            F N   L VP V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  219 FLNSDALYVPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARSFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_PROST (Probable ubiquinone biosynthesis protein ubiB OS=Providencia stuartii GN=ubiB PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 53/217 (24.42%), Postives = 99/217 (45.62%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            F N   L VP V+ DY    V+ +E + G+ ++++ AL  QG N   +A R ++ +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    +  L + F A + +D +KV +  +D   +    ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ ++
Sbjct:  218 FENSSMLYVPEVYADYCRENVMVMERIYGIPVSDIAALKAQGTNMKILAERGVKVFFTQVFRDSFFHADMHPGNIFVSYEHPEDPLYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADTNVEDFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDLWKTAKPFLED 433          
The following BLAST results are available for this feature:
BLAST of FC930499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
UBIB_KLEP32.969e-1724.07Probable ubiquinone biosynthesis protein ubiB OS=K... [more]
UBIB_DELAS2.969e-1723.92Probable ubiquinone biosynthesis protein ubiB OS=D... [more]
UBIB_CHRVO2.969e-1725.24Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
Y647_MYCTU6.615e-1729.59Uncharacterized protein Rv0647c/MT0675 OS=Mycobact... [more]
UBIB_RALSO6.615e-1726.36Probable ubiquinone biosynthesis protein ubiB OS=R... [more]
UBIB_SODGM8.640e-1724.17Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEHH8.640e-1723.70Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESW1.474e-1623.04Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEPC1.474e-1623.04Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_PROST1.474e-1624.42Probable ubiquinone biosynthesis protein ubiB OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC34008B12EF PostHarvC1 Citrus clementina cDNA clone C34008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930499 ID=FC930499; Name=FC930499; organism=Citrus clementina; type=EST; length=742bp
ATTTTCGGAATATAAAGTGGCTCCGGGTACCTCTGGTGTTTTGGGATTAT
ACTGCTACAAAGGTGTTGACATTGGAGTATGTACCAGGAGTTAAGATCAA
TGAGTTGAAAGCACTAGATTTGCAGGGTTATAATCGTTCTCAAATTGCAT
CGCGTGCAATTGAAGCGTACTTGAATCAGATACTCAAAACTGGTTTCTTT
CATGCTGATCCTCATCCTGGAAATCTTGCTGTCGATTTAGATGAAGCACT
CATCTATTATGATTTTGGTATGATGGGGGAGATTAAATCCTTTACCCGTG
AAAGATTGCTTGATCTTTTCTATGCAGTTTATGAGAAAGATGCCAAAAAG
GTTATCCAAAGGTTGATTGATCTCGAAGCACTTCAACCCACAGGAGATAT
GTCATCGGTAAGGAGATCCGTGCAATTTTTCTTGGACAATTTGCTAAGCC
AGAGTCCAGATCAGCAGCAGACTTTGGCTGCAATTGGAGAGGATTTGTTT
GCAATAGCTCAAGATCAACCATTTCGGTTTCCATCCACCTTTACTTTCGT
TATAAGGGCATTCTCCACACCTGAAGGTATCGGCAACATTCTTGACCCAG
ATTTTTCCTTTGTGAAGGTTGCTGCACCTTATGCACAGGAGCTATTGGAT
TTAAACAGCAGCAGCAGTCTGGAACACAGCTAGTGGAAGCAATCAGGGAA
ACAGCTGATGATGCCAGATCTTTCGACATGTCCATGCCATCC
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