FC930499

Overview
NameFC930499
Unique NameFC930499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHEB8 (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella baltica (strain OS185) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 48/211 (22.75%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L VP V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHEB5 (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 48/211 (22.75%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L VP V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHEB2 (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella baltica (strain OS223) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 48/211 (22.75%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L VP V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ERWCT (Probable ubiquinone biosynthesis protein ubiB OS=Erwinia carotovora subsp. atroseptica GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 50/216 (23.15%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F N   L VP ++ DY    +L +E + G+ ++++ AL   G +   +A R ++ +  Q+ +  FFHAD HPGN+ +  D       I  D G++G +    +  L + F A + +D +KV +  +D   + P  +++    +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FENSPMLYVPEIYSDYCRESMLVMERIYGIPVSDVDALKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFISYDHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVADFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_CITK8 (Probable ubiquinone biosynthesis protein ubiB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 50/216 (23.15%), Postives = 99/216 (45.83%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F N   L VP V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FENSPMLYVPEVYSDYCSQDMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHEDO (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 49/211 (23.22%), Postives = 101/211 (47.87%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L VP ++ D + T+++ +E + G+ +++L AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D +++ Q  ++   +    D+ +  ++++   + + ++ P  + +   +   LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYVPYIYEDLSFTRLIVMERIYGIAVSDLSALKAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPDNPYYIGLDCGIMGTLTDVDKRYLAENFLAFFNRDYQRIAQLHLESGWVSEHTDIVAFEQAIKIVCEPMFNK-PLAEISFGHVLLALFRTARQFNMVVQPQLVLLQKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHESR (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain MR-7) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 47/211 (22.27%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L +P V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_SHESM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain MR-4) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 47/211 (22.27%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   21 LRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQE 641
            L +P V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +     EG+G  L P     + A P+ ++
Sbjct:  225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLEQ 434          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_AZOVD (Probable ubiquinone biosynthesis protein ubiB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 55/216 (25.46%), Postives = 97/216 (44.91%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F     L VP ++WD+   KVL +E + GV + +L AL  QG +   +A R +E +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    ++ L     A +++D +KV Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +     EG+G  L P+      A P+ +
Sbjct:  221 FEGSPLLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVNEFEAAIRTVCEPIF-EKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFLE 435          
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_CELJU (Probable ubiquinone biosynthesis protein ubiB OS=Cellvibrio japonicus (strain Ueda107) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 53/216 (24.54%), Postives = 101/216 (46.76%), Query Frame = 3
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F N   L VP V+W+YT T VL +E + G+ + +L AL+ Q  +  ++A R +E +  Q+ +  FFHAD HPGN+ V  +       I  D  ++G +    +  L     A++ +D ++V +  ++   +     +  +  +V+   + +  + P ++ + A +  +LF  A+            + +     EG+G  L PD      A P+ +
Sbjct:  213 FLNSPLLYVPEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESGWVPSHVRVEELEAAVRTVCEPIF-EKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWATAHPFLE 427          
The following BLAST results are available for this feature:
BLAST of FC930499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
UBIB_SHEB84.288e-1622.75Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEB54.288e-1622.75Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEB24.288e-1622.75Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_ERWCT4.288e-1623.15Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_CITK84.288e-1623.15Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
UBIB_SHEDO5.600e-1623.22Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESR7.314e-1622.27Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESM7.314e-1622.27Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_AZOVD7.314e-1625.46Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_CELJU9.552e-1624.54Probable ubiquinone biosynthesis protein ubiB OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC34008B12EF PostHarvC1 Citrus clementina cDNA clone C34008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930499 ID=FC930499; Name=FC930499; organism=Citrus clementina; type=EST; length=742bp
ATTTTCGGAATATAAAGTGGCTCCGGGTACCTCTGGTGTTTTGGGATTAT
ACTGCTACAAAGGTGTTGACATTGGAGTATGTACCAGGAGTTAAGATCAA
TGAGTTGAAAGCACTAGATTTGCAGGGTTATAATCGTTCTCAAATTGCAT
CGCGTGCAATTGAAGCGTACTTGAATCAGATACTCAAAACTGGTTTCTTT
CATGCTGATCCTCATCCTGGAAATCTTGCTGTCGATTTAGATGAAGCACT
CATCTATTATGATTTTGGTATGATGGGGGAGATTAAATCCTTTACCCGTG
AAAGATTGCTTGATCTTTTCTATGCAGTTTATGAGAAAGATGCCAAAAAG
GTTATCCAAAGGTTGATTGATCTCGAAGCACTTCAACCCACAGGAGATAT
GTCATCGGTAAGGAGATCCGTGCAATTTTTCTTGGACAATTTGCTAAGCC
AGAGTCCAGATCAGCAGCAGACTTTGGCTGCAATTGGAGAGGATTTGTTT
GCAATAGCTCAAGATCAACCATTTCGGTTTCCATCCACCTTTACTTTCGT
TATAAGGGCATTCTCCACACCTGAAGGTATCGGCAACATTCTTGACCCAG
ATTTTTCCTTTGTGAAGGTTGCTGCACCTTATGCACAGGAGCTATTGGAT
TTAAACAGCAGCAGCAGTCTGGAACACAGCTAGTGGAAGCAATCAGGGAA
ACAGCTGATGATGCCAGATCTTTCGACATGTCCATGCCATCC
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