FC930499

Overview
NameFC930499
Unique NameFC930499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECODH (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain K12 / DH10B) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECOBW (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain K12 / BW2952) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO8A (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O8 (strain IAI1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO7I (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO5E (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO57 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O157:H7 GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO55 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain 55989 / EAEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO27 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_ECO24 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 49/216 (22.69%), Postives = 100/216 (46.30%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F +   L +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +     EG+G  L P     K A P+ +
Sbjct:  220 FEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC930499 vs. ExPASy Swiss-Prot
Match: UBIB_AERHH (Probable ubiquinone biosynthesis protein ubiB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 51/216 (23.61%), Postives = 101/216 (46.76%), Query Frame = 3 
Query:    3 FRNIKWLRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTPEGIGNILDPDFSFVKVAAPYAQ 638
            F   + L VP VF ++   +VL +E + G+ ++++ AL+  G N   +A R +E +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D ++V +  ++   + P   +     +++  L+ +  + P  + +   +  +LF  A+    +       + +     EG+G  L P     + A PY +
Sbjct:  219 FTGSEALYVPEVFTEHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLEPIF-EKPLSEISFGHVLLNLFNTARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYLE 433
The following BLAST results are available for this feature:
BLAST of FC930499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
UBIB_ECODH1.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOBW1.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO8A1.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO7I1.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO5E1.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO571.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO551.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO271.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECO241.248e-1522.69Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_AERHH1.248e-1523.61Probable ubiquinone biosynthesis protein ubiB OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34008B12EF PostHarvC1 Citrus clementina cDNA clone C34008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930499 ID=FC930499; Name=FC930499; organism=Citrus clementina; type=EST; length=742bp
ATTTTCGGAATATAAAGTGGCTCCGGGTACCTCTGGTGTTTTGGGATTAT
ACTGCTACAAAGGTGTTGACATTGGAGTATGTACCAGGAGTTAAGATCAA
TGAGTTGAAAGCACTAGATTTGCAGGGTTATAATCGTTCTCAAATTGCAT
CGCGTGCAATTGAAGCGTACTTGAATCAGATACTCAAAACTGGTTTCTTT
CATGCTGATCCTCATCCTGGAAATCTTGCTGTCGATTTAGATGAAGCACT
CATCTATTATGATTTTGGTATGATGGGGGAGATTAAATCCTTTACCCGTG
AAAGATTGCTTGATCTTTTCTATGCAGTTTATGAGAAAGATGCCAAAAAG
GTTATCCAAAGGTTGATTGATCTCGAAGCACTTCAACCCACAGGAGATAT
GTCATCGGTAAGGAGATCCGTGCAATTTTTCTTGGACAATTTGCTAAGCC
AGAGTCCAGATCAGCAGCAGACTTTGGCTGCAATTGGAGAGGATTTGTTT
GCAATAGCTCAAGATCAACCATTTCGGTTTCCATCCACCTTTACTTTCGT
TATAAGGGCATTCTCCACACCTGAAGGTATCGGCAACATTCTTGACCCAG
ATTTTTCCTTTGTGAAGGTTGCTGCACCTTATGCACAGGAGCTATTGGAT
TTAAACAGCAGCAGCAGTCTGGAACACAGCTAGTGGAAGCAATCAGGGAA
ACAGCTGATGATGCCAGATCTTTCGACATGTCCATGCCATCC
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