FC930503

Overview
NameFC930503
Unique NameFC930503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PHLP2_DICDI (Phosducin-like protein 2 OS=Dictyostelium discoideum GN=phlp2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  256 RKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCT 600
            RKKR+ +M+   ++++FG +  IS   +  EV++    V VVV L+K+G  +C L+ Q L  LA+K+ ATKFVKI S + I NYPD+NLPT+LVY NG +    + LR+ G   T
Sbjct:   74 RKKRIQQMKVEAELNKFGELKEISEPSYKSEVTECK-GVMVVVHLFKNGIPQCQLVNQHLTILAKKFKATKFVKIRSEEAIHNYPDKNLPTILVYFNGDIVGQIITLRATGGDAT 187          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: YGI9_SCHPO (Phosducin-like protein C2A9.09 OS=Schizosaccharomyces pombe GN=SPBC2A9.09 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  253 YRKKRLAEMREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 588
            YR KR+ E ++    ++FGSV PIS  ++  EV+ A  +V+VVV +++D    C LL   LE LA  YP  KFVKI     + NYP+  +PT+L+Y +G ++   + L + G
Sbjct:   69 YRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEVTDASKEVFVVVHMFQDSLPACKLLAAILERLAPMYPQIKFVKIPGKQAVENYPEAMMPTLLIYGHGDLQQQILTLATLG 180          
BLAST of FC930503 vs. ExPASy Swiss-Prot
Match: PHLP1_DICDI (Phosducin-like protein 1 OS=Dictyostelium discoideum GN=phlp1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 1
Query:  256 RKKRLAEMREATKISR---------FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGL-RSFGRRCTPEGVALVLCQSDPVLN 648
            RK R+ + +   +I+          FG    I  S ++ E+   PP+V+V++ L+++   EC LL Q L +LA KY   KF+KI+S +   NY D  LP++LVY  G +  ++V L    GR    E + L+L   D + N
Sbjct:  150 RKARMEQWKSKQQITSDVKKPEKKVFGYFKQIDSSQYIHEIDNEPPNVFVIIHLFQNYIPECVLLNQQLGQLAVKYRYIKFLKILSKEAKENYHDEALPSLLVYIGGKLLVSFVPLTEELGRNFDQEDLELLLSSYDIIPN 290          
The following BLAST results are available for this feature:
BLAST of FC930503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PHLP2_DICDI2.824e-1944.35Phosducin-like protein 2 OS=Dictyostelium discoide... [more]
YGI9_SCHPO6.955e-1839.29Phosducin-like protein C2A9.09 OS=Schizosaccharomy... [more]
PHLP1_DICDI1.039e-1333.33Phosducin-like protein 1 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC34008C04EF PostHarvC1 Citrus clementina cDNA clone C34008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930503 ID=FC930503; Name=FC930503; organism=Citrus clementina; type=EST; length=691bp
GAAAGGAGGATGGCGGATTATCACTTTGTGTACAAAGATGTAGAAGGAGC
ATCAACACAATGGGACGATATACAAAGGAAGCTCGGAAATTTGCCGCCAA
AGCCGCCTGCTTTCAAGCCCTCCGCCTTCGAACCGGCGGTGGACCCTGAT
TCGGTCCCCAAAGACAAATCGTGGGTCGATGAGAAAACTGAAGAAGAGCT
TGAAGAGTTAGAGGATGACCCCGATCTAGATGATGACCGCTTCCTCGAAG
AATACAGGAAAAAGAGGTTGGCTGAGATGAGAGAAGCAACCAAGATATCT
AGATTCGGATCAGTGATGCCAATTTCTGGATCAGATTTCGTGAGAGAGGT
TTCACAAGCTCCCCCTGATGTTTGGGTGGTTGTGATTCTCTACAAGGATG
GGTTTGCTGAGTGTGGGCTGCTTATGCAATGCTTGGAAGAGTTGGCAAGA
AAATACCCTGCAACAAAATTTGTTAAAATAATATCGACAGATTGCATTCC
TAATTACCCAGATCGTAACCTTCCCACAGTATTGGTTTACAACAATGGTG
CAGTGAAAGCAAATTATGTAGGTTTGCGTAGCTTTGGCCGGAGATGCACG
CCTGAAGGTGTTGCATTAGTTCTCTGTCAGTCAGATCCTGTGCTAAATGA
TGGTCAGAGTGGAAGTGATCCATCTAGGAAAACTGTGCTTG
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