FC930506

Overview
NameFC930506
Unique NameFC930506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930506 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  484 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 609
            P SVDWR+KGAV  VKDQ  CGSCWAFST+A VEGINKIVTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
BLAST of FC930506 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  202 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLM 687
            E+   F+ + ++  ++Y +  E   R +IF  NL        E+  T + G+  F+DLT EE+  ++ G R  A       +      P   E++P S DWRK   A++ +KDQ +C  CWA +    +E + +I     + +S QEL+DC     +GC+GG +
Sbjct:   37 ELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLY-GYRRAAGGVPSMGREIRSEEPE--ESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRC-GDGCHGGFV 196          
BLAST of FC930506 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNG 678
            FE +     K Y  + E+E   + F E+L++++ +       K  +N  +DL+ +E+++ +L     F   +T                 +P  +D R    V  ++ QG CGSCWAFS +AA E        + + LSEQELVDC + +  GC+G
Sbjct:   26 FEEFKKAFNKNYATVEEEEVARKNFLESLKYVEAN-------KGAINHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH--GCHG 172          
BLAST of FC930506 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 44/156 (28.21%), Postives = 73/156 (46.79%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNG 678
            FE +     K+Y    ++E   + F E+++++  +          +N  +DL+ +E+++  L     F   +T              G A P  +D R+   V  ++ QG CGSCWAFS +AA E          + L+EQELVDC + +  GC+G
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNA-PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH--GCHG 171          
BLAST of FC930506 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 44/156 (28.21%), Postives = 72/156 (46.15%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNG 678
            FE +     K Y    ++E   + F E+L++++ +       K  +N  +DL+ +E+++  L     F   +T                +LP  +D R    V  ++ QG CGSCWAFS +A+ E          + L+EQELVDC  +   GC+G
Sbjct:   26 FEEFKKAFNKTYATPEKEEVARKNFLESLKYVESN-------KGAINHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC--ASQNGCHG 172          
BLAST of FC930506 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 54/192 (28.12%), Postives = 89/192 (46.35%), Query Frame = 1
Query:  109 FLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGA--RFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNG 678
            F+  ++S L +S+V       +  S  RT +E    F     KH     A  E  + F    E++          +  K  +N+F+D++ EE+++ +L +   + A +         +        +P+ +D R  G V ++K+Q +CGSCWAFS +A VE          + LSEQELVDC + +  GC G
Sbjct:    3 FVLAIASLLVLSVVY------AYPSEIRTFEEFKKAFN----KHYVTPEAEQEARQNFLASLEHIE---------KAGKGRINQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVNIPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDCASQH--GCGG 173          
The following BLAST results are available for this feature:
BLAST of FC930506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CYSP2_CARCN1.057e-1380.95Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
CATW_HUMAN1.057e-1329.88Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
PEPT1_DERFA1.994e-1229.49Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
PEPT1_DERPT1.688e-1128.21Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
PEPT1_EURMA4.910e-1128.21Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
PEPT1_PSOOV6.413e-1128.13Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34008C08EF PostHarvC1 Citrus clementina cDNA clone C34008C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930506 ID=FC930506; Name=FC930506; organism=Citrus clementina; type=EST; length=697bp
GAAACTCTGCCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAA
GTTCTTTTCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGT
TTTTACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTA
TCTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGA
TGAGGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTT
ATAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAAT
CTTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGG
GTTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATC
TGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGC
AACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTG
GAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGA
GTTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATT
GTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGA
TACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCAT
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