FC930531

Overview
NameFC930531
Unique NameFC930531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 64/114 (56.14%), Postives = 88/114 (77.19%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            NI  + +QLIG+TP+V+LN V +GC A +A K E+ +P  S+KDR   +M+ DAE K LI+PGK+ ++E TSGN GI +AF+AA KGYK++LTMP+  SLERRV +RAFGA+L+
Sbjct:   74 NIADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELV 187          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  358 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S ERR+ + AFG +L+
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELV 117          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 62/113 (54.87%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            I +DV++LIG TPLV+LN V +GC A +A K E  +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AFMAA KGYK+++TMPS  SLERR+ +R F ++L+
Sbjct:    8 IAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELV 120          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 63/114 (55.26%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            +I +DV++LIG TPLV+LNKV++GC      K E  +P +S+KDR   +M+ DAE K LI+PG + +IEPTSGN GI +AFMAA KGYK+ LTMP+  S+ERR+ ++AFGA+L+
Sbjct:    7 SIAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELV 120          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 61/113 (53.98%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            I  DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+ERR+ + AFG +L+
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELV 119          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.753e-30
Identity = 62/137 (45.26%), Postives = 96/137 (70.07%), Query Frame = 1
Query:  295 PAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            P PV + +  Q + +        NI  DV+QLIG TP+V+LN+V++GC A IA K E  +P  S+KDR  ++M+ +AEN   I+P KT ++EPT+GN G+ +AF+AA KGYK+++TMP+  ++ERR+ +RA GA+++
Sbjct:   79 PPPVTTVAEEQHIAESE----TVNIAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKLIVTMPASINIERRMLLRALGAEIV 211          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVS--EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL 702
            I  ++++LIGRTPLV LN++   EGCGA I VK E   P AS+KDR  + M+  AE + LI PGKT +IEPTSGN GI++A +AA KGY+++LTMP   S ERR  ++A+GA L
Sbjct:    3 IASNITELIGRTPLVRLNRIPLLEGCGAKIVVKLEGMNPAASVKDRIGINMINRAEQEGLIEPGKTLLIEPTSGNTGIALAMVAAAKGYQLILTMPETMSQERRAMLKAYGAKL 116          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.130e-26
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            +I  D++QLIGRTPLV L +V++G  A I  K E F P  S+KDR  VAML+ AE   LI P  T I+EPTSGN GI++A + A +GY+ VLTMP   SLERR+ +RA+GA+LI
Sbjct:    2 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELI 114          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.130e-26
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            +I  D++QLIGRTPLV L +V++G  A I  K E F P  S+KDR  VAML+ AE   LI P  T I+EPTSGN GI++A + A +GY+ VLTMP   SLERR+ +RA+GA+LI
Sbjct:    2 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELI 114          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            +I  DV+QL+G TPLV L +V+EG  A +  K E F P  S+KDR  VAM++ AE   LI P  T I+EPTSGN GI++A + A +GY  VLTMP   S+ERR+ +RA+GA+LI
Sbjct:    2 SIAEDVTQLVGNTPLVRLRRVTEGALADVVAKLESFNPANSVKDRIGVAMIDTAEEAGLIKPD-TVILEPTSGNTGIALAMVCAARGYHCVLTMPETMSIERRMLLRAYGAELI 114          
The following BLAST results are available for this feature:
BLAST of FC930531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CYSKP_ARATH8.932e-3256.14Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_ARATH8.932e-3253.45Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_SOLTU2.599e-3154.87Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_MAIZE2.599e-3155.26Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_BRAJU2.599e-3153.98Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK4_ARATH3.753e-3045.26Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_SYNY31.022e-2754.39Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCTU1.130e-2655.26Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO1.130e-2655.26Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_MYCLE1.632e-2552.63Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]

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Properties
Property NameValue
Genbank descriptionC34008E09EF PostHarvC1 Citrus clementina cDNA clone C34008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930531 ID=FC930531; Name=FC930531; organism=Citrus clementina; type=EST; length=716bp
GGTTAAAACAAAGAAATTAGTATAAAAGGGGGGCTCCGGATTCTGTGACC
ACCACGCACCTTCTACATACTACCATCACCACACTCAGAGCCTTAATTTG
TTATCCGCTGCAAGTGCTGGTGGAAGTGGGAGTGGTTCTTGTAAAGAGTG
AATTATTATTTTTGCTCAAATTTAAAGTTCCTCCTCCAACCTCCATTATT
ATTAAAAATGGCTGCTGCTTTGAGGAGTTTCTTGAAGAAAAGAGCCTTAA
CATGCAGCGAACCCATGTTGATGAGAAGACTGGTCTCCTCACAGCCGGCG
CCGGTTGATTCTTCATCTTTTGCTCAGAGACTCAGAGATTTGCCCAAGGA
TCTTCCAGCTACCAACATCAAGAGAGATGTTTCCCAGCTCATTGGAAGAA
CCCCGCTTGTGTTTCTTAACAAAGTCAGTGAAGGATGTGGAGCTTATATT
GCTGTCAAGCAAGAAATGTTCCAACCCACTGCTAGCATCAAGGACAGACC
AGCAGTGGCCATGCTCGAAGATGCAGAAAATAAAAACTTAATTTCTCCCG
GAAAGACCACTATCATAGAGCCCACGTCAGGGAACATGGGAATAAGCATG
GCGTTTATGGCAGCAATGAAAGGGTATAAGATGGTTCTAACTATGCCCTC
TTATACAAGCTTGGAGAGGAGAGTGACAATGAGAGCATTTGGAGCTGATT
TAATCTCACAGATCCA
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