FC930531

Overview
NameFC930531
Unique NameFC930531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15171 contig Ccv1_Contig15171:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  376 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            D SQ IG+TPLV LN++ +G  A +  K E   P  S+K R   AM+ DAE + L+ PGK  +IEPTSGN GI++AF+AA +G  + LTMP   SLERR  + A+GA L+
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLV 118          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            +   +++LIG TP+V LN++++   A + +K E   P +S+KDR  +AM+E AE +  +  G T IIEPTSGN GI +A +AA KG K +L MP   S+ERR  +RA+GA+L+
Sbjct:    4 VANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGKLKAGNT-IIEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELV 115          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  379 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + Q IG TPLV L ++    G+ I VK E   P  S+KDR A++M+ +AE +  I PG   +IE TSGN GI++A +AA+KGY+M L MP   S ERR  MRA+GA+LI
Sbjct:    4 LEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELI 111          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  298 APVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            A  DS  +   L   PK LP      D+ + IG TP+V +NK+S+  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA+KGY+ ++ MP   S+E+   +RA GA+++
Sbjct:   56 AMADSPHYHTVLTKSPKILP------DILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDT-IIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIV 186          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  379 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + Q IG TPLV L ++    G+ + +K E   P  S+KDR A++M+ +AE +  I PG   +IE TSGN GI++A +AA+KGY+M L MP   S ERR  MRA+GA+LI
Sbjct:    4 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELI 111          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  379 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLIS 708
            ++  +G TPLV L +++      + +K E   P  S+KDRPA++M+  AE +  I PG T +IE TSGN GI++A  AA+KGY+M+L MP  +S ER+  M A+GA+LIS
Sbjct:    8 IADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELIS 116          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  385 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            Q +G TPLV L ++S       +G    +  K E   PT SIKDRPAV M+E AE   L+ PG  TI+EPTSGN GIS+A  A +KGY+++  MP  TS+ERR  +  +GA +I
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII 121          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  385 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            Q +G TPLV L ++S       +G    +  K E   PT SIKDRPAV M+E AE   L+ PG  TI+EPTSGN GIS+A  A +KGY+++  MP  TS+ERR  +  +GA +I
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII 121          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  385 QLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + IG TP+V +N +       I +K E   P  SIKDR A+AM+EDAE K L++   +TIIEPTSGN GI +A +AA+KGYK++L MP   S+ERR  M A+GA+ +
Sbjct:    8 ETIGNTPVVKINNLFNS-DHEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNKD-STIIEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFV 112          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  307 DSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            DS      L   PK LP      D+ Q IG TP+V +NK+ +  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA+KGY+ ++ MP   SLE+   +RA GA+++
Sbjct:   62 DSPHQHAALAKSPKILP------DILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDT-IIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIV 189          
The following BLAST results are available for this feature:
BLAST of FC930531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
SRPG_SYNE72.438e-2150.00Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_BACSU5.431e-2145.13Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSM_SALTY1.580e-2049.54Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CBS_MOUSE1.580e-2041.30Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CYSM_ECOLI4.598e-2047.71Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_PSESY6.005e-2045.45Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CYSM_MYCTU7.843e-2047.37Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO7.843e-2047.37Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK_FLAS31.024e-1949.53Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CBS_RABIT1.024e-1942.22Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionC34008E09EF PostHarvC1 Citrus clementina cDNA clone C34008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930531 ID=FC930531; Name=FC930531; organism=Citrus clementina; type=EST; length=716bp
GGTTAAAACAAAGAAATTAGTATAAAAGGGGGGCTCCGGATTCTGTGACC
ACCACGCACCTTCTACATACTACCATCACCACACTCAGAGCCTTAATTTG
TTATCCGCTGCAAGTGCTGGTGGAAGTGGGAGTGGTTCTTGTAAAGAGTG
AATTATTATTTTTGCTCAAATTTAAAGTTCCTCCTCCAACCTCCATTATT
ATTAAAAATGGCTGCTGCTTTGAGGAGTTTCTTGAAGAAAAGAGCCTTAA
CATGCAGCGAACCCATGTTGATGAGAAGACTGGTCTCCTCACAGCCGGCG
CCGGTTGATTCTTCATCTTTTGCTCAGAGACTCAGAGATTTGCCCAAGGA
TCTTCCAGCTACCAACATCAAGAGAGATGTTTCCCAGCTCATTGGAAGAA
CCCCGCTTGTGTTTCTTAACAAAGTCAGTGAAGGATGTGGAGCTTATATT
GCTGTCAAGCAAGAAATGTTCCAACCCACTGCTAGCATCAAGGACAGACC
AGCAGTGGCCATGCTCGAAGATGCAGAAAATAAAAACTTAATTTCTCCCG
GAAAGACCACTATCATAGAGCCCACGTCAGGGAACATGGGAATAAGCATG
GCGTTTATGGCAGCAATGAAAGGGTATAAGATGGTTCTAACTATGCCCTC
TTATACAAGCTTGGAGAGGAGAGTGACAATGAGAGCATTTGGAGCTGATT
TAATCTCACAGATCCA
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