FC930531

Overview
NameFC930531
Unique NameFC930531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 48/114 (42.11%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  370 KRDVSQLIGRTPLVFLNKVSEGCGA--YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + +V  L+G TPL+ L K+ +  G    I  K E++ P  SIKDR A +M+E+AE    I P ++T+IEPTSGN GI +A + A+KGY+ ++T+P   S E+   ++A GA++I
Sbjct:   11 RHNVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEII 124          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  343 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCG--AYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            PK LP      D+ + IG TP+V +N++S+  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA+KGY+ ++ MP   S+E+   +RA GA+++
Sbjct:   71 PKILP------DILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDT-IIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIV 186          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            I  + + LIG TPLV LN++     A + +K E F P+ S+KDR A  M+ +AE   L+ PG + IIEPTSGN GI +A  AA +GYK +L MP   + ER   ++A+GA+++
Sbjct:    4 IVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVV 115          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  379 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            ++  +G TPLV L ++       + VK E   P  S+KDRPA++M+  AE +  I PG T +IE TSGN GI++A  AA+KGYKM+L MP  ++ ER+  M A+GA+LI
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELI 115          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  361 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + I  D S  IG TPLV LN++  G    I  K E   P+ S+K R    M+ DAE + ++ PG   ++EPTSGN GI++A++AA +GYK+ LTMP   S+ERR  ++A GA+L+
Sbjct:    2 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV 112          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  361 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + I  D S  IG TPLV LN++  G    I  K E   P+ S+K R    M+ DAE + ++ PG   ++EPTSGN GI++A++AA +GYK+ LTMP   S+ERR  ++A GA+L+
Sbjct:    2 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV 112          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  361 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + I  D S  IG TPLV LN++  G    I  K E   P+ S+K R    M+ DAE + ++ PG   ++EPTSGN GI++A++AA +GYK+ LTMP   S+ERR  ++A GA+L+
Sbjct:    2 SKIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV 112          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  361 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + I  D S  IG TPLV LN++  G    I  K E   P+ S+K R    M+ DAE + ++ PG   ++EPTSGN GI++A++AA +GYK+ LTMP   S+ERR  ++A GA+L+
Sbjct:    2 SKIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV 112          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  343 PKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            PK LP      D+ + IG TP+V +NK+ +  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA++GY+ ++ MP   S E+   +RA GA+++
Sbjct:   74 PKILP------DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIV 189          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  343 PKDLPATNIKRDVSQLIGRTPLVFLNKVSE--GCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            PK LP      D+ + IG TP++ +NK+ +  G    +  K E F    S+KDR ++ M+EDAE    + PG T IIEPTSGN GI +A  AA++GY+ ++ MP   S E+   +RA GA+++
Sbjct:   74 PKILP------DILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDT-IIEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIV 189          
The following BLAST results are available for this feature:
BLAST of FC930531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CBS_YEAST1.338e-1942.11Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CBS_RAT1.338e-1942.28Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CYSM_BACSU1.747e-1944.25Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSM_PSEAE3.892e-1945.87Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSK_SALTY5.084e-1944.35Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI5.084e-1944.35Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_ECOLI6.639e-1944.35Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO576.639e-1944.35Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CBS_HUMAN4.304e-1841.46Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CBS_MACFA5.621e-1840.65Cystathionine beta-synthase OS=Macaca fascicularis... [more]

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Properties
Property NameValue
Genbank descriptionC34008E09EF PostHarvC1 Citrus clementina cDNA clone C34008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930531 ID=FC930531; Name=FC930531; organism=Citrus clementina; type=EST; length=716bp
GGTTAAAACAAAGAAATTAGTATAAAAGGGGGGCTCCGGATTCTGTGACC
ACCACGCACCTTCTACATACTACCATCACCACACTCAGAGCCTTAATTTG
TTATCCGCTGCAAGTGCTGGTGGAAGTGGGAGTGGTTCTTGTAAAGAGTG
AATTATTATTTTTGCTCAAATTTAAAGTTCCTCCTCCAACCTCCATTATT
ATTAAAAATGGCTGCTGCTTTGAGGAGTTTCTTGAAGAAAAGAGCCTTAA
CATGCAGCGAACCCATGTTGATGAGAAGACTGGTCTCCTCACAGCCGGCG
CCGGTTGATTCTTCATCTTTTGCTCAGAGACTCAGAGATTTGCCCAAGGA
TCTTCCAGCTACCAACATCAAGAGAGATGTTTCCCAGCTCATTGGAAGAA
CCCCGCTTGTGTTTCTTAACAAAGTCAGTGAAGGATGTGGAGCTTATATT
GCTGTCAAGCAAGAAATGTTCCAACCCACTGCTAGCATCAAGGACAGACC
AGCAGTGGCCATGCTCGAAGATGCAGAAAATAAAAACTTAATTTCTCCCG
GAAAGACCACTATCATAGAGCCCACGTCAGGGAACATGGGAATAAGCATG
GCGTTTATGGCAGCAATGAAAGGGTATAAGATGGTTCTAACTATGCCCTC
TTATACAAGCTTGGAGAGGAGAGTGACAATGAGAGCATTTGGAGCTGATT
TAATCTCACAGATCCA
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