FC930534
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 54/172 (31.40%), Postives = 83/172 (48.26%), Query Frame = 2 Query: 47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 547 ++ T+E L F + G +V+V V KD T +G+GF+ + D A K K+ G+ + +A QD S + GA LF+G L D DE+ + D F FG IV + I+ D +TG RGF F+ +D ++ D + Q L + + V A K + G Sbjct: 40 YRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK-SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALPKQNDQQGGG 208
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: RBM7_HUMAN (RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 2 Query: 50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 241 +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F+ E YA+ +LN IKLYG+PI++ Sbjct: 20 KVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLYGRPIKI 82
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: RBM7_BOVIN (RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 2 Query: 50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 310 +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F+ E YA+ +LN IKL+G+PI++ +A S +V + +GN P Sbjct: 20 KVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 62/214 (28.97%), Postives = 92/214 (42.99%), Query Frame = 2 Query: 47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGG 673 ++ T++ L F + G +V+V V KD T +G+GF+ + D A K+ G+ + +A Q+ S + GA LF+G L D DE+ L + F FG IV+ I+ D DTG RGF FI +D ++ D I + N+ + V A K + G A Q R G + QN G GG Sbjct: 33 YRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA-RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVS-VNIVSDKDTGKKRGFAFIEFDDYDPVDKII-LQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGG 243
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11 Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 2 Query: 11 FNKLLCFCFFIFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 460 F KL F + FQ TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F+ +G I T +I+ D +G RGFGF+++D + D + Sbjct: 8 FRKL--FIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bpback to top |