FC930534

Overview
NameFC930534
Unique NameFC930534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4556 contig Ccv1_Contig4556:171..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 64/164 (39.02%), Postives = 98/164 (59.76%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 538
            V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L DTFSAFG I+ + K+  D D G S+ FGF+ Y++ EA+ AAIE++NG  L +R++ V  +  KKD + +
Sbjct:   78 VNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL-SVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESK 239          

HSP 2 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 71/230 (30.87%), Postives = 107/230 (46.52%), Query Frame = 2
Query:   56 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPY 694
            TE+   ELF   G + ++Y+ KD      +G+GFV F   E A  A++ LN  ++ G+ I V +A +                 +K S   G NLF+ NLD  +D + L + F  FG I T+ K+M D D G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD    R     ++I A N                   +QNA  A G  G  +PP  Y
Sbjct:  260 TEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTI-TSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDV---RRSQLEQQIQARNQ----------------MRMQNAAAAGGLPGQFMPPMFY 467          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 58/154 (37.66%), Postives = 93/154 (60.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 511
            VTE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K L DTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC---DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 59/170 (34.71%), Postives = 98/170 (57.65%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 538
            +  + L++ F   G +++  V  D   +  +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D DTG SRGFGF++Y + E +  A+  MNG+ +  R I V  A K+ + +GE
Sbjct:  110 IDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275          

HSP 3 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 51/175 (29.14%), Postives = 92/175 (52.57%), Query Frame = 2
Query:   59 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            ++ L E+F   G  ++V V  D  T   +G+GFV + + E+A  A+  +N  ++ G+ I V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  204 DKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 62/164 (37.80%), Postives = 100/164 (60.98%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGE 538
            VTE +L+ELF Q G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L  +++ V +   KKD + +
Sbjct:   72 VTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL-SCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 233          

HSP 2 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 77/288 (26.74%), Postives = 119/288 (41.32%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDT----------------------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAP--QANGTVGGPVPP-----RPYANG 703
            +VT++    LF + G V +  + +D+ T   +G+GFV F S EDA  A++ LN  + +G+ + V +A                  Q+K S   G NL+I NLD +VD++ L   FS FG I T+ K+MRD  T                                              G S+GFGF+ + + + +  A+  MN + + N+ + V+ A +KD    R     + I A N    Q++      A  P     AP     G+  G +PP      PY  G
Sbjct:  252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPI-TSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDV---RKNQLEQSIQARNQLRMQQA---AAAAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQG 532          

HSP 3 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N++P+V +      F  +G  VT+  + RD +TG SRGFGF+++ S E +  A++ +N +    + + V  A KK  + E
Sbjct:  160 IDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREE 326          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGE 538
            VTE +L+ELF Q G V ++ V +D +T    GY +V + S  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +N   L  +++ V Y   KKD + +
Sbjct:   76 VTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL-SCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSK 237          

HSP 2 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 54/184 (29.35%), Postives = 95/184 (51.63%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--RHGTPAERILAAN 577
            +  + L + F   G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+  +  ++   D F+ +G  VT+  + RD + G SRGFGF+++ + E +  A+E +NG+    + + V  A KK  + E  R    A R+  AN
Sbjct:  164 IDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGD-VTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 344          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/154 (37.66%), Postives = 93/154 (60.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 511
            VTE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K L DTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC---DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 56/170 (32.94%), Postives = 98/170 (57.65%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 538
            +  + L++ F   G +++  V  D   +  +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D ++G SRGFGF++Y + E +  A+  MNG+ +  R + V  A K+ + +GE
Sbjct:  110 IDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLS-VKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275          

HSP 3 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 49/175 (28.00%), Postives = 92/175 (52.57%), Query Frame = 2
Query:   59 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            ++ L E+F   G  ++V V  D  +   +G+GFV + + E+A  A+  +N  ++ G+ + V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  204 DKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   63 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218          

HSP 2 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 50/169 (29.59%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  151 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 538
            V E LL+E+F   G V ++ V +D VT    GY +V F   ED + AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L DTF+AFG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   62 VNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKIL-SCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESK 223          

HSP 2 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 72/238 (30.25%), Postives = 110/238 (46.22%), Query Frame = 2
Query:   56 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASXP 718
            +EE   +LF   G + ++Y+ KD      +G+GFV F + E A  A+  LN  ++ G+ I V +A + ++ L+                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD    R     ++I A N    Q +        G P     P   G   G  PP    NG    P
Sbjct:  244 SEEEFKKLFEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAA----TGGIPGQFIPPMFYGQQPGFFPPNGRGNGPFPGP 471          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   59 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 214          

HSP 2 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 52/169 (30.77%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++ E+     F  FG I T+  + RD + G SRGFGF++Y + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  147 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEI-TSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREE 312          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   60 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 215          

HSP 2 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 53/169 (31.36%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D DV E+   + F  FG I T+  + RD + G SRGFGF+++ + E++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  148 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   65 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 220          

HSP 2 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 53/169 (31.36%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++D+      F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  153 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 318          
The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
PABP_LODEL5.943e-2339.02Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR5.943e-2337.66Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_MAGGR7.762e-2337.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB7.762e-2337.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABB_XENLA7.762e-2337.66Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_NEOFI1.014e-2237.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA1.014e-2240.24Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN1.014e-2237.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR1.014e-2237.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC1.014e-2237.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC34008E12EF PostHarvC1 Citrus clementina cDNA clone C34008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bp
TTCTTAAACATTTAATAAACTCTTGTGTTTTTGTTTCTTTATATTCTTTC
AGGTTACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTT
GTTAATGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATA
CGGATTTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGG
TGCTGAATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCA
TCCCAAGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAA
CCTTGACCCAGATGTGGATGAGAAACTACTATGTGATACATTCAGTGCGT
TTGGAGTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGA
AATTCTCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGA
TGCAGCTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTA
CTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACT
CCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAG
GCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTC
AGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAAT
GGTGCTGCTTCANGCCCAATTTCA
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