FC930534

Overview
NameFC930534
Unique NameFC930534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4556 contig Ccv1_Contig4556:171..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   63 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218          

HSP 2 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 50/169 (29.59%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  151 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316          

HSP 3 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 63/282 (22.34%), Postives = 111/282 (39.36%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDT----------------------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--------RHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVP 682
            +VT+E   ++F + G + +  + +D+     +G+GFV F + + A  A+  +N  ++ G+ + V +A +                 +K S   G NL++ NL  DVD++ L + FS FG I T+ K+MRD  T                                              G S+GFGF+ + S + +  A+  MN + +  + + V+ A +KD +          R+    ++  AA        +P   +  G      A Q  G    P P
Sbjct:  243 EVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI-TSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQP 522          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   62 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 217          

HSP 2 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 55/169 (32.54%), Postives = 95/169 (56.21%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DPDV E+     F  FG I T+  + RDP+ G SRGFGF++Y + E++ AA++ M+ + +  +++ V  A KK  + E
Sbjct:  150 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI-TSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREE 315          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.729e-22
Identity = 57/154 (37.01%), Postives = 92/154 (59.74%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 511
            VTE +L+E F  AGP++++ V +D  T     Y ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K L DTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC---DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 56/164 (34.15%), Postives = 93/164 (56.71%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            +  + L++ F   G +++  V  D   +  +GYGFV F + E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D D+G SRGFGF++Y + E +  A+  MNG+ +  R I V  A K+
Sbjct:  110 IDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269          

HSP 3 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 49/175 (28.00%), Postives = 91/175 (52.00%), Query Frame = 2
Query:   59 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            ++ L E+F   G  ++V V  D  +   +G+GFV + + E+A  A+  +N  ++ G+ I V +A                  Q++ +   G NL++ NLD  +D+  L   F  +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  204 DKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 60/154 (38.96%), Postives = 94/154 (61.04%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 511
            VTE +L+E+F   GPV ++ V +D VT    GY +V + +  D + A++ LN   + G+  R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+  D + G SRGF F+ Y + EA+DAAI+A+NG  L ++++ V +
Sbjct:   57 VTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL-SCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208          

HSP 2 Score: 95.1301 bits (235), Expect = 3.987e-19
Identity = 69/234 (29.49%), Postives = 118/234 (50.43%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA------------SQDKKSLD-----VGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPV---PPRP 691
            +VT+    +L    GP ++V + +D    + +G+GFV + + E A  A+  LN  ++ GK +   +A            S ++K L+      G NL++ NLD + D+  L   F AFG I T+ K+MRD D+G SRGFGF+ Y S + +  A+  MNG+ +  + + V+ A +KD + +          A  +  +Q+++    + +G P +Q      G +G P+   PP P
Sbjct:  237 EVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTI-TSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQ----------ALESQIAQRAQQRMQYGAGFPGMQ------GYMGQPMYGYPPMP 451          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 55/164 (33.54%), Postives = 99/164 (60.37%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 538
            VTE +L+E F  AGP++++ + +D +T+    Y +V F+  +DA++A+  +N   + GKP+R+  + +D      G  N+F+ NLD  ++ K L DT SAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L  R++ V  +  +K+ + E
Sbjct:   22 VTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182          

HSP 2 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 64/213 (30.05%), Postives = 106/213 (49.77%), Query Frame = 2
Query:   59 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK-GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQN 643
            +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +     NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +         +R+ +     +Q++ P   F +  P  QN
Sbjct:  204 DERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQN 412          

HSP 3 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 55/164 (33.54%), Postives = 94/164 (57.32%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            +  + L++     G +++  V  D   N  +GYGFV F + E A+ AIK +N + L G+ + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  110 INNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 58/154 (37.66%), Postives = 89/154 (57.79%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 511
            VTE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   L G+PIR+  + +D      G  N+FI NL+  +D K L DTFS FG I++        D   SRGFGF+ +++ EA+  AI  MNG  L +R++ V +
Sbjct:   22 VTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC---DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            V E+ L +LF Q G +++V V +D  +   + +GFV F   E+A  A+  +N  ++ G+ +   +A                  QD+     G NL++ NLD  +D+  L   FS +GVI T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  202 VDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 538
            V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L DTFS FG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   63 VNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKIL-SCKVATD-DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 69/235 (29.36%), Postives = 110/235 (46.81%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPY 694
            I  + +EE L +LF   G + ++Y+ KD      +G+GFV +   E A  A++ LN  ++ G+ I V +A + ++ ++                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN +    + + V+ A +KD    R     ++I A N                   +QNA    G  G  +PP  Y
Sbjct:  240 IDLEYSEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDV---RRSQLEQQIQARNQ----------------MRMQNAAATGGIPGQFIPPMFY 452          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 61/164 (37.20%), Postives = 100/164 (60.98%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 538
            VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L ++++ V  +  KKD + +
Sbjct:   66 VTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227          

HSP 2 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D   N  +GYGFV + + E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D D  E+   D F  FG I T+  + RD ++G SRGFGF+++ S + + AA+EA+N +    +++ V  A KK  + E
Sbjct:  154 IDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEI-TSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREE 320          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 59/172 (34.30%), Postives = 101/172 (58.72%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 562
            +VTE  L++LF     VV+V V +D+      GY ++ F +  DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L +TFS+FG I++  K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  +     TP  R
Sbjct:   59 KVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227          

HSP 2 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 58/169 (34.32%), Postives = 90/169 (53.25%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L+E F   G +++  V  D VT   +GYGFV+F  EE A  AI  LN + +  K +       R  +A  +        N+++ NL  ++ E  L  TF  FGVI ++  +MRD  +GNSR FGF++++  EA+ +A+E MNG  L +  + V  A KK  + E
Sbjct:  147 IDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312          

HSP 3 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 67/235 (28.51%), Postives = 112/235 (47.66%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANG 703
            ++ E+ L + F + G + +  V +D+  N  + +GFV F   E A  A++ +N I L    +   R  K S+ ++ L                GANL++ NLD  VD++ L + FS +G  VT+ K+M +P  G SRGFGF++Y + E +  A+  MNG+ +  + + ++ A +K+ +   H       + A  P S    P      GPP      Q   ++   VP +P   G
Sbjct:  239 EIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR-RAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQNGASM---VPSQPIGYG 466          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 538
            V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   63 VNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL-SCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 69/234 (29.49%), Postives = 110/234 (47.01%), Query Frame = 2
Query:   56 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQA----NGTVGGPVP-PRP 691
            +EE   +LF   G + ++Y+ KD+     +G+GFV F   E A  A++ LN  ++ G+ I V +A + ++ L+                  G NLF+ NLD  +D + L + F  FG I T+ K+M D + G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD    R     ++I A N    Q +    L     P +    Q     NG    P P P P
Sbjct:  245 SEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTI-TSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPYPGPNP 472          
The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
PABP_ASPFU1.014e-2237.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL1.014e-2237.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA1.729e-2237.01Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP_CRYNE2.950e-2238.96Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN2.950e-2233.54Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PAP1L_HUMAN3.852e-2237.66Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_PICST3.852e-2238.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM3.852e-2237.20Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH5.031e-2234.30Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_CANAL6.571e-2238.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC34008E12EF PostHarvC1 Citrus clementina cDNA clone C34008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bp
TTCTTAAACATTTAATAAACTCTTGTGTTTTTGTTTCTTTATATTCTTTC
AGGTTACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTT
GTTAATGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATA
CGGATTTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGG
TGCTGAATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCA
TCCCAAGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAA
CCTTGACCCAGATGTGGATGAGAAACTACTATGTGATACATTCAGTGCGT
TTGGAGTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGA
AATTCTCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGA
TGCAGCTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTA
CTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACT
CCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAG
GCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTC
AGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAAT
GGTGCTGCTTCANGCCCAATTTCA
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