FC930534

Overview
NameFC930534
Unique NameFC930534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
PostHarvC1cdna_library
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 538
            V E LL+E+F   G V ++ V +D VT    GY +V F    D   AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  K+D + +
Sbjct:   69 VNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRIL-SCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESK 230          

HSP 2 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 71/232 (30.60%), Postives = 111/232 (47.84%), Query Frame = 2
Query:   74 ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASXP 718
            E+F   GPV +V++  D+     +G+GFV F + E A  A+K +N  ++ G+ + V +A + ++ LD                  G NLF+ NLD  +D + L + F  FG I T+ ++M D D G S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD    R     ++I A N    Q +      A+G P    +P   G   G  PP     G A  P
Sbjct:  257 EIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTI-TSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAA----AAGMPGQFMSPMFYGQQPGFFPPN--GRGGAQGP 476          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 505
            V+E  L+++F   G V ++ V +D +T    GY +V F   + A  AI+ LN   + GK  R+  + +D      GA N+FI NL PD+D K L DTFS FG I+++ K+  D +TG S+GFG++ ++  E++  AI+A+NG  L  ++I V
Sbjct:   46 VSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS-KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195          

HSP 2 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 62/202 (30.69%), Postives = 99/202 (49.01%), Query Frame = 2
Query:  140 HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQK--SRPHTLFASGPPSLQNAPQANGTVGGPVPPR 688
            ++G+GFV F + EDA   ++ LN  +  G+P+ VN+A +                 +K +   G NLFI NLD  +D+K L + F+ +G I T+ K+M   + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N    Q+  +      A+G P     P   G     +PPR
Sbjct:  255 NKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTI-TSAKVM-TTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGV----MPPR 447          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 58/170 (34.12%), Postives = 99/170 (58.24%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAE 559
            V E  L++ F  AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   +  KPIR+  + +D      G  N+FI NLD  +D K + DTFSAFG I+ + K+  D + GNS+G+GF+ +++ EA++ +I+ +NG  L  +++ V     +  + +  G  A+
Sbjct:   13 VNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL-SCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 180          

HSP 2 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 54/165 (32.73%), Postives = 94/165 (56.97%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYKK 523
            +  + +++ F   G +++  V  D   N  +GYGFV F +EE A+ +I  +N + L GK + V K     + +K L   A LF    + N   D D++ L + F  +G I T+ K+M   D G S+GFGF+++++ EA++AA++A+NG+ +   + + V+ A KK
Sbjct:  101 IDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI-TSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262          

HSP 3 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 49/176 (27.84%), Postives = 88/176 (50.00%), Query Frame = 2
Query:   59 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL-YGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            +E L E F   G + + Y    +     +G+GFV F + E A+ A++ LN   +  GK + V +A                  Q +     G NL++ NLD  +D+  L   FS +G I T+ K+M D + G S+GFGF+ +++   +  A+  +NG+ + ++ + V+ A +K+ +
Sbjct:  196 DEKLKEFFEPYGKITS-YKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNI-TSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 58/158 (36.71%), Postives = 93/158 (58.86%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L+ELF   G V ++ V +D VT    GY +V +      + A+  LN   + GKP R+  + +D      G  N+FI NLD  +D K L DTF+AFG I+ + K+ +D + G S+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   53 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 208          

HSP 2 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 52/169 (30.77%), Postives = 96/169 (56.80%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L + F   G +++  V +D    + +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DP+V+++     F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  141 IDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-TSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 58/161 (36.02%), Postives = 96/161 (59.63%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            V E  L +LF Q  PV N+ V +D +T+   GY +V F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K L +TFS+FG I+ + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L ++Q+ V +  ++  +
Sbjct:   56 VNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213          

HSP 2 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 58/169 (34.32%), Postives = 89/169 (52.66%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 538
            +  + L+E F   G +++  V  D V    +GYGFV+F  EE A  AI  LN + L  K + V      QD+   + GA     N+++ NL  ++ +  L  TF  +G I ++  +M+D  +GNSR FGF+++ S EA+  A+E MNG  L    + V  A KK  + E
Sbjct:  143 IDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308          

HSP 3 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 71/243 (29.22%), Postives = 117/243 (48.15%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRP------HTLFASGPPSLQNAPQANGTVG-GPVPPRPYANG 703
            ++T++ L + F + G + +  V KD+  N  + +GFV F S E A  A++ +N I L G+ +    R  K S  ++ L                G+NL++ NLD  V+++ L + FS +G  VT+ K+M +   G SRGFGF++Y + E +  A++ MNG+ +  + + V+ A +K+   ER            +P +    P      H     GP S  + P   G  G G VP +P   G
Sbjct:  235 EITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE---ERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 470          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 55/166 (33.13%), Postives = 95/166 (57.23%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGER 541
            +VTE +L+E F  AGP++++ + +D++T    GY +V ++   DA  A++ LN   + G+P+R+  + +D      G  N+FI NL   +D K L + FSAFG I++        D    +G+GF+ +   E+++ AI+ MNG +L  R+I V  +   K+ + ER
Sbjct:   12 EVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC---DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 58/160 (36.25%), Postives = 93/160 (58.13%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKD 526
            +TE LL+++F   GP+ ++ V +D VT    GY +V +   E    AI+ LN  ++ G+P R+  + +D      G+ N+FI NL P +D K L +TFS FG ++ + K+  D + GNSRGFGF+ +     +  AIEA+NG  +   ++ V+ +  KKD
Sbjct:   61 ITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL-SCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD 218          

HSP 2 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 72/240 (30.00%), Postives = 114/240 (47.50%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNP--SSQKSRPHTLFASGPPSLQNAPQANGTVGGP---VPPRPYANG 703
            + T+E   +LF Q G +V+  + KD      +G+GFV F     A  A++ LN  +   + + V +A +                 +K +   G NLFI NLD  +D++ L + F+ +G I T+ ++MRD + GNS+GFGF+ + S E +  A+   N Q +  + + V+ A +KD    R    A++I A N      Q+ +     A+G P  Q  PQ    V  P     P P  NG
Sbjct:  241 ETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTI-TSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPG-QYMPQMFYGVMAPRGFPGPNPGMNG 473          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 63/171 (36.84%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTPAE 559
            VTE+LL+  F   GPV+++ + +D+VT    GY +V F    DA  A+  +N   + GK IR+  + +D      G  N+FI NLD  +D K L + FSAFG I+++ K+M D D G S+G+ F+ + +  A+D AIE MNG+ L   ++ V  +  +KD + E     +E
Sbjct:   21 VTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188          

HSP 2 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 53/164 (32.32%), Postives = 90/164 (54.88%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            +  + L+E F   G +++  V  D   +  +GY FV F+++  AD AI+ +N   L G  +       R ++ ++ +       N++I N   D+D++ L D FS +G  ++  K+M D  +G S+GFGF+S+DS EA+  A+E MNG+ +  + I V  A KK
Sbjct:  109 IDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268          

HSP 3 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 51/171 (29.82%), Postives = 91/171 (53.22%), Query Frame = 2
Query:   59 EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 520
            +E L ++F + G  ++V V  D  +   +G+GFV F S E A  A++ +N   + G+ I V +A +        K+  +           G  L+I NLD  +D++ L + FS+FG I +  K+M++   G S+GFG I + S E +  A+  MNG+ L ++ ++++ A +
Sbjct:  203 DERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 72/231 (31.17%), Postives = 114/231 (49.35%), Query Frame = 2
Query:   50 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS-SQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPR 688
            + T+E   ELF + GP+V+  + KD    L +G+GFV +   EDA  A++ LN  +L G+ + V +A +  + + V                 G NLF+ NLD  VD++ L + F+ +G I T+ K+MR  + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N     Q +      A+G P     P   G     +PPR
Sbjct:  229 ETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI-TSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGV----MPPR 449          

HSP 2 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 508
            V+E  L+++F   G V ++ V +D +T    GY +V F   E    AI+ LN   + G+  R+  + +D      G+ N+FI NL PD+D K L DTFS FG I+++ KI  D + G S+GFGF+ ++   A+  AI+A+NG  L  ++I V+
Sbjct:   49 VSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199          

HSP 3 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 47/167 (28.14%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 532
            +  + L++ F   G +++  +  D      +G+GFV F  E  A  AI  LN + L G+ I       R  + SQ +++     NL++ N++ +  ++   + F+ FG IV+   + +D D G  +GFGF++Y+  E +  A+EA+N   L   ++ V  A KK+ +
Sbjct:  137 IDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS-ASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 505
            VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L   FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V
Sbjct:   29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177          

HSP 2 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 49/169 (28.99%), Postives = 89/169 (52.66%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 508
            + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  210 IDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374          
The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
PABP_PICGU1.121e-2139.02Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA2.497e-2138.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME7.265e-2134.12Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_EMENI1.239e-2036.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH1.619e-2036.02Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PAP1M_HUMAN3.606e-2033.13Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_KLULA3.606e-2036.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN3.606e-2036.84Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP_YEAST4.709e-2031.17Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_PONPY4.709e-2037.50Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]

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Properties
Property NameValue
Genbank descriptionC34008E12EF PostHarvC1 Citrus clementina cDNA clone C34008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bp
TTCTTAAACATTTAATAAACTCTTGTGTTTTTGTTTCTTTATATTCTTTC
AGGTTACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTT
GTTAATGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATA
CGGATTTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGG
TGCTGAATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCA
TCCCAAGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAA
CCTTGACCCAGATGTGGATGAGAAACTACTATGTGATACATTCAGTGCGT
TTGGAGTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGA
AATTCTCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGA
TGCAGCTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTA
CTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACT
CCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAG
GCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTC
AGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAAT
GGTGCTGCTTCANGCCCAATTTCA
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