FC930534

Overview
NameFC930534
Unique NameFC930534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4556 contig Ccv1_Contig4556:171..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 532
            +T+E L  LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 532
            +T+E L  LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 532
            +T+E L  LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 532
            +T+E L  LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 532
            +T++    LF   G + +  + +D++T    GYGFV +    DAD AI  LN +KL  K I+V+ A     S+   ANL++  L   + +K +   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 58/175 (33.14%), Postives = 93/175 (53.14%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYV----PKDRVTNLHQG-----------YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE L+ +LF Q GP  +  +    P  R  N   G           Y FVEF    DA  A+  +N  K+ GK ++VN A   S  KK      ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI  M GQ+L  RQI  ++A +K
Sbjct:   20 VTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQITVSYAYKKDTK 532
            +T+E    LF   G + +  + +D++T    GYGFV +    DAD AI  LN +KL  K I+V+ A     S+   ANL++ +L   +++K +   FS +G I+T+ +I+ D  TG+ SRG GFI +D    ++ AI+ +NGQ     +  ITV +A     K
Sbjct:   46 MTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSSLPKTMNQKEMEQLFSQYGRIITS-RILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQK 206          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            + V  + L  LF QAG V    V  +R T+  +G+GFV   S ++A+ A++  N   L G+ + VNKA+       +  +  +    +++GNL  DVD   L   FS  G +V   +++ D +TG SRGFGF++    +  + AI A++GQ L  R I V+ A ++
Sbjct:  159 YDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE L+ +LF Q GP  N  +  D   N    Y FVEF     A  A+  +N  K+ GK ++VN A   S  KK                 ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI+ M GQ+L  RQI  ++A +K
Sbjct:   18 VTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE L+ +LF Q GP  N  +  D   N    Y FVEF     A  A+  +N  K+ GK ++VN A   S  KK                 ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI+ M GQ+L  RQI  ++A +K
Sbjct:   18 VTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          
The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
ELAV2_RAT8.312e-1735.19ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV2_PONAB8.312e-1735.19ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE8.312e-1735.19ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN8.312e-1735.19ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV3_HUMAN1.086e-1634.57ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
TIAR_MOUSE2.419e-1633.14Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
ELAV3_XENTR2.419e-1634.97ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ROC3_ARATH3.159e-1633.1331 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
TIA1_MOUSE4.125e-1632.75Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN4.125e-1632.75Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]

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Properties
Property NameValue
Genbank descriptionC34008E12EF PostHarvC1 Citrus clementina cDNA clone C34008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bp
TTCTTAAACATTTAATAAACTCTTGTGTTTTTGTTTCTTTATATTCTTTC
AGGTTACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTT
GTTAATGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATA
CGGATTTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGG
TGCTGAATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCA
TCCCAAGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAA
CCTTGACCCAGATGTGGATGAGAAACTACTATGTGATACATTCAGTGCGT
TTGGAGTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGA
AATTCTCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGA
TGCAGCTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTA
CTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACT
CCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAG
GCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTC
AGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAAT
GGTGCTGCTTCANGCCCAATTTCA
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