FC930534

Overview
NameFC930534
Unique NameFC930534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
PostHarvC1cdna_library
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            + V  E L  +F  AG V    V  +R T+  +G+GFV   + E+A+ A+++LN   + G+ + VNKA+         +   +    +++GNL  DVD   L   FS  G +V + +++ D +TG SRGFGF++  S    + AI A++GQ L  R + V+ A ++
Sbjct:   64 YDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVV-SARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 59/182 (32.42%), Postives = 87/182 (47.80%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD--------------------------VGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 514
            F V    L +LF  AG V  V V  D++T   +G+GFV   S  + + A +  N  +L G+P+RVN      K  D                           G  +++GNL   VD+  L   FS  G +V   +++ D D+G S+GFGF++YDS +    AI++++G  L  RQI VS A
Sbjct:  100 FNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVV-EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 532
            +T+E L  LF   G + +  + +D++T     GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   77 MTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 52/166 (31.33%), Postives = 91/166 (54.82%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            + +  E L +LF QAG V    V  +R T+  +G+GFV   + E+AD A+++ +   L G+ + VNKA+       +  ++      +++GN+  D+D+  L   FS  G +V + +++ D ++G SRGFGF++  S      AI  ++GQ L  R I V+ A ++
Sbjct:  106 YDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV-SARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484
            I++++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  141 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484
            I++++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  135 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484
            I++++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  141 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484
            I++++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  136 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484
            I++++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  107 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514
            +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
ROC1_SPIOL4.125e-1632.5328 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_ARATH4.125e-1632.42Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ELAV2_XENLA1.568e-1534.97ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ROC3_NICSY2.047e-1531.3328 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PUF60_RAT2.047e-1530.06Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB2.047e-1530.06Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE2.047e-1530.06Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN2.047e-1530.06Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN2.047e-1530.06Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
ELAV1_XENTR2.674e-1534.62ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionC34008E12EF PostHarvC1 Citrus clementina cDNA clone C34008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bp
TTCTTAAACATTTAATAAACTCTTGTGTTTTTGTTTCTTTATATTCTTTC
AGGTTACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTT
GTTAATGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATA
CGGATTTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGG
TGCTGAATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCA
TCCCAAGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAA
CCTTGACCCAGATGTGGATGAGAAACTACTATGTGATACATTCAGTGCGT
TTGGAGTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGA
AATTCTCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGA
TGCAGCTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTA
CTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACT
CCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAG
GCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTC
AGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAAT
GGTGCTGCTTCANGCCCAATTTCA
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