FC930543

Overview
NameFC930543
Unique NameFC930543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.596e-30
Identity = 79/224 (35.27%), Postives = 119/224 (53.12%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFK---PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRK-WCVPKSDASDAALQANIDYVCGTG-VDCKPIQAGGPCFNPN 643
            PY+G+        L+YALFK   P   + DP T  +Y +MFDA +DA Y +M+ + +  + +VV ETGWPS+G  ++  + +ANA ++N NL+K V +  G P  P+     YI+ L+NE+ +   +SE+N+G+  P+ T VY            P    GG            S A+ G   +CV K+DA D  L   +++ CG G  +C  IQ G PC+ PN
Sbjct:  201 PYYGYTTANGIFPLDYALFKQLSPVKQIVDPNTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVVTETGWPSSGGSDEAAATVANAETFNTNLIKRVLNNSGPPSQPDIPINTYIYELYNEDKRSGPVSERNWGILFPNGTSVY------------PLSLSGG----------SSSAALNGSSMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPN 402          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.305e-29
Identity = 72/221 (32.58%), Postives = 114/221 (51.58%), Query Frame = 2
Query:    2 PYFGFKPQTLN----YALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGK--GTPLMPNRTFEVYIFALFNENLKP-SISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDASDAALQANIDYVCG-TGVDCKPIQAGGPCFNP 640
            PYF +    +N    +ALF+ ++   DP TG  Y N+ D  LD+V  AM K+GY  + + + ETGWP+ GD ++  +N+ NA +YN NL+K +++    GTP  P      ++F+LFNEN K  S +++++G+  PD +P+YDV         G    P  +P    P          G+ WCVP   A++  L+  +   C  +   C  +  G  C+ P
Sbjct:  218 PYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGDIDETGANILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKSGSGTQRHWGILHPDGSPIYDVDFTGQTPLTGFNPLP--KPTNNVP--------YKGQVWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEP 428          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 68/142 (47.89%), Postives = 87/142 (61.27%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGY-EDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDV 412
            PYF +        L+YAL   +A V     G  Y NMFDA LDAVY+A++K G  E +++VV ETGWPS G      +++ NA +Y  NLV+HV    GTP  P +  E YIFA+FNEN KP   EQNFG+F+PD + VY V
Sbjct:  178 PYFAYSADPSSVRLDYALLSSSAAVAVTDNGVEYANMFDAILDAVYAAVEKAGGGESLELVVSETGWPSGGGGYG--ASVENAAAYINNLVRHVG---GTPRRPGKAVETYIFAMFNENQKPEGVEQNFGMFQPDMSQVYHV 314          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.276e-27
Identity = 66/140 (47.14%), Postives = 89/140 (63.57%), Query Frame = 2
Query:    2 PYFGFKPQT--LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-SISEQNFGLFKPDFTPVYDV 412
            PYFG       L YALFK   G+ D      Y N+FDA +D++Y A +K+G ++++I+V E+GWPS G P+   + L NA++Y  NL+ HV  G GTP  P RT E Y+FA+F+EN K    SEQ+FGLFKPD  P Y +
Sbjct:  202 PYFGHADDNVPLPYALFKQQ-GLNDAG----YQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPS---ATLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSEQHFGLFKPDQRPKYQL 333          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 2
Query:    2 PYFGFKPQ----TLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-SISEQNFGLFKPDFTPVYDV 412
            PYF ++      +LNYA F+P   V D   G  YT++FDA +DAVY+A++K G   V +VV E+GWPSAG      ++  NA +YN  L+ HV  G GTP       E YIFA+FNEN K    +E++FGLF PD +P Y++
Sbjct:  197 PYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGG---FAASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNI 332          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 2
Query:    2 PYFGFKPQT-----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSIS-EQNFGLFKPDFTPVY 406
            PYF ++        LNYA  +P   V D   G  YT++FDA +D++Y+A++K G  +V +VV E+GWPSAG      +++ NA +YN  L+ H+ S  GTP  P    E YIFA+FNEN KP    E+NFGLF P+  PVY
Sbjct:  176 PYFAYRDDRGQNIRLNYATLQPGTTVRDNGNGLTYTSLFDAMVDSIYAALEKAGTPNVRVVVSESGWPSAGGFG---ASVENARNYNQGLIDHIRS--GTPKRPG-AIETYIFAMFNENRKPGDEVERNFGLFFPNKQPVY 310          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 67/152 (44.08%), Postives = 89/152 (58.55%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAG-VFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGD-PNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSI-SEQNFGLFKPDFTPVYDVGILRNKQA 436
            PYF +        LNYA F+P A  V D   G  YTN+F+A +DA+Y+A++K G   V +VV E+GWPSAG     PE    NA +YN  L+ HV    GTP  P    E Y+FA+FNEN KP + +E++FGLF P+  PVY +     + A
Sbjct:  170 PYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAGGFAATPE----NARAYNQGLIDHV--AHGTPKKPGH-MEAYVFAMFNENQKPGLETERHFGLFYPNKRPVYHINFAGGRLA 314          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-SISEQNFGLFKPDFTPVYDV 412
            PYFG    T    L+YALF       +PA    Y N+FDA LD++Y A++K G ++V+I+V E+GWPS G+     + + NA +Y  NL+ HV SG GTP  P +  E Y+FA+F+EN K   I+E++FGLF PD    Y +
Sbjct:  139 PYFGHIFNTADVPLSYALFTQQEA--NPA---GYQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGN---SAATIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITEKHFGLFSPDQRAKYQL 272          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-SISEQNFGLFKPDFTPVYDV 412
            PYFG    T    L+YALF       +PA    Y N+FDA LD++Y A++K G ++V+I+V E+GWPS G+     + + NA +Y  NL+ HV SG GTP  P +  E Y+FA+F+EN K   I+E++FGLF PD    Y +
Sbjct:  207 PYFGHIFNTADVPLSYALFTQQEA--NPA---GYQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGN---SAATIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITEKHFGLFSPDQRAKYQL 340          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13J_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-O (Fragment) OS=Nicotiana tabacum GN=PR0 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNEN-LKPSISEQNFGLFKPDFTPVYDV 412
            PYFG    T    L+YALF       +PA    Y N+FDA LD++Y A++K G  +V+I+V E+GWPS G+     + + NA +Y  NL+ HV  G GTP  P +T E Y+FA+F+EN  K  I+E++FGLF PD    Y +
Sbjct:   24 PYFGHIYNTADVPLSYALFTQQEA--NPA---GYQNLFDALLDSMYFAVEKAGGPNVEIIVSESGWPSEGN---SAATIENAQTYYRNLIDHVKRGAGTPKKPGKTIETYLFAMFDENDKKGEITEKHFGLFSPDQRAKYQL 157          
The following BLAST results are available for this feature:
BLAST of FC930543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E134_ARATH1.596e-3035.27Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
EA6_ARATH2.305e-2932.58Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13F_HORVU4.806e-2747.89Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13A_SOLLC6.276e-2747.14Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13B_HORVU2.019e-2545.07Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13E_HORVU5.874e-2544.68Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13D_HORVU6.495e-2444.08Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13I_TOBAC1.890e-2343.66Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13G_TOBAC1.890e-2343.66Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13J_TOBAC4.210e-2343.66Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]

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Properties
Property NameValue
Genbank descriptionC34008F09EF PostHarvC1 Citrus clementina cDNA clone C34008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930543 ID=FC930543; Name=FC930543; organism=Citrus clementina; type=EST; length=691bp
CCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGCCTTGTTTAAAC
CAAACGCCGGCGTTTTTGATCCTGCCACTGGGAAGAATTACACCAACATG
TTTGACGCCCAGCTTGATGCTGTTTACTCGGCTATGAAGAAAGTTGGGTA
CGAAGACGTGGACATTGTGGTTGGGGAAACTGGGTGGCCGTCGGCGGGCG
ACCCGAACCAGCCGGAGTCGAACTTGGCCAATGCGCTGTCGTATAATGGG
AATCTCGTGAAGCACGTGAACTCTGGAAAAGGAACGCCTCTGATGCCTAA
CAGGACTTTTGAGGTGTACATTTTCGCCTTATTCAACGAGAACCTGAAAC
CATCCATATCGGAGCAGAATTTCGGGTTGTTTAAACCCGATTTTACGCCG
GTTTATGATGTGGGCATTTTGCGTAATAAACAGGCACAGGGTCCCGCGAA
AGCACCAGGTGGAAGACCTCCCACCGAAGCTCCAGTTGCAAAACCGCCAT
CAGGCGCGGTCACGGGCAGGAAATGGTGCGTGCCAAAATCAGACGCCTCG
GATGCAGCGCTGCAGGCAAACATAGACTACGTGTGCGGCACTGGCGTGGA
TTGCAAGCCTATACAAGCCGGTGGGCCCTGCTTCAATCCGAACATGTGCG
GTCACACGCAGCATACGCCATGACGCCTTCTATCAGCCACG
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