FC930543

Overview
NameFC930543
Unique NameFC930543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 2
Query:    2 PYF--GFKPQ--TLNYALF-KPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDVGILRNK 430
            PYF   + P+  +L YALF  P+  V+D   G  Y N+FDA LDA+YSA+++     +++VV E+GWPSAG      +   N  +Y  NL++HV    GTP  PNR  E Y+FA+F+EN K    E++FGLF P+    Y++     K
Sbjct:  215 PYFTYAYNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVVVSESGWPSAG---AFAATFDNGRTYLSNLIQHVKG--GTPKRPNRAIETYLFAMFDENKKQPEVEKHFGLFFPNKWQKYNLNFSAEK 355          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSIS-EQNFGLFKPDFTPVYDV 412
            PYF +K       L +A F P +   +   G  YTN+FDA +D++Y+A++K G   V +V+ E+GWPS        +   NA +YN  L+ HV  G G+P       E YIFA+FNENLK     E+NFGLFKP+ +P Y +
Sbjct:  194 PYFAYKGNPRDIQLTFATFVPGSTTVND-NGLTYTNLFDAMVDSIYAALEKAGTPGVKVVISESGWPS---DQGFGATAQNARAYNQGLINHV--GNGSPKKAG-ALESYIFAMFNENLKDGDELEKNFGLFKPNMSPAYAI 328          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 2
Query:    5 YFGF----KPQTLNYALFK-PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKP 388
            YF +    K  +L+YALF+ P+  V D + G  Y N+FDA +DAVY+A++K G   ++IVV E+GWPS+G      ++L NA +YN NLV++V   +GTP  P    E Y+FA+F+EN K    E+ +GLF P
Sbjct:  210 YFAYTANPKDISLDYALFRSPSVVVQDGSLG--YRNLFDASVDAVYAALEKAGGGSLNIVVSESGWPSSGG---TATSLDNARTYNTNLVRNVK--QGTPKRPGAPLETYVFAMFDENQKQPEFEKFWGLFSP 335          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.554e-20
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 2
Query:   29 LNYALFKPNAGVF-DPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDV 412
            + YALF  +  V  D A G  Y N+FD  +DA Y+AM K G   V +VV E+GWPS G      +  ANA  YN +L+ HV  G+GTP  P    E YIFA+FNEN K S  EQN+GLF P+   VY +
Sbjct:  190 MGYALFNASGTVVRDGAYG--YQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGG---TAATPANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDSGVEQNWGLFYPNMQHVYPI 310          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.554e-20
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = 2
Query:    2 PYFGFKPQ----TLNYALFK-PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDV 412
            PYF +       +L YALF  PNA V D +  + Y N+FDA LD+VY+AM++ G   V IVV E+GWPSAG     +    NA +Y  NL++H    +G+P  P    E YIFA+F+EN K    E++FGLF P+  P Y++
Sbjct:  178 PYFSYSGNPGQISLPYALFTAPNAVVQDGS--RQYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAGAFGATQD---NAATYLRNLIQHAK--EGSPRKPG-PIETYIFAMFDENNKNPELEKHFGLFSPNKQPKYNL 311          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 67/208 (32.21%), Postives = 99/208 (47.60%), Query Frame = 2
Query:   29 LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLK---PSISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDA--SDAALQANIDYVCGTGVDCKPIQAGGPCFN 637
            ++YA F  NA   +   G  Y NMFDA  D +  A++K G+ ++ I++GE GWP+ GD N   +NL  A  +N   + H++ GKGTP  P    + Y+F+L +E+ K   P   E+++G+F  D  P Y +  L         +A G R                 RKWCV K +    D  +   + Y C  G DC  +  G  C N
Sbjct:  214 VDYAFFDGNAQPLNDG-GTFYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDSN---ANLDYAKKFNQGFMAHISGGKGTPRRPG-PIDAYLFSLIDEDAKSVQPGYFERHWGIFTFDGLPKYALN-LGTTNTGALIQAKGVR--------------YLERKWCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCAN 400          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALF-KPNAGVFDPATGKNYTNMFDAQLDAVYSAMKK-VGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSI-SEQNFGLFKPDFTPVYDV 412
            PYF +        L YALF  P   V D +    Y N+FDA +D   SA+++  G  +V +VV E+GWPSAG      +  ANA +YN NL+ HV  G+GTP  P    E YIFA+FNE+ K    SE++FGLF PD +PVY +
Sbjct:  197 PYFSYVGNPAQIDLKYALFTSPGTVVQDGSNA--YQNLFDALVDTFVSALEENAGAGNVPVVVSESGWPSAGGD---AATAANAQTYNQNLINHV--GQGTPKRPG-PIETYIFAMFNEDQKTGAESERHFGLFNPDKSPVYPI 332          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 2
Query:    2 PYFGFKPQ----TLNYALFK-PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDV 412
            PYF +       +L YALF  PN  V D +  + Y N+FDA LD+VY+AM++ G   V IVV E+GWPSAG     +    NA +Y  NL++H    +G+P  P    E YIFA+F+EN K    E++FGLF P+  P Y++
Sbjct:  169 PYFSYSGNPGQISLPYALFTAPNVVVQDGS--RQYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAGAFGATQD---NAATYLRNLIQHAK--EGSPRKPG-PIETYIFAMFDENNKNPELEKHFGLFSPNKQPKYNL 302          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 61/142 (42.96%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PYFGFKPQ----TLNYALFK-PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDV 412
            PYF +       +L YALF  PN  V D +  + Y N+FDA LD+VY+AM++ G   V IVV E GWPSAG     +    NA +Y  NL++H    +G+P  P    E YIFA+F+EN K    E++FGLF P+  P Y++
Sbjct:  204 PYFSYSGNPGQISLPYALFTAPNVVVQDGS--RQYRNLFDAMLDSVYAAMERTGGGSVGIVVSECGWPSAGAFGATQD---NAATYLRNLIQHAK--EGSPRKPG-PIETYIFAMFDENNKNPELEKHFGLFSPNKQPKYNL 337          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 2
Query:    2 PYFGFKPQ----TLNYALFK-PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDV 412
            PYF +       +L Y+LF  PN  V D +  + Y N+FDA LD+VY+A+++ G   V IVV E+GWPSAG      +   NA +Y  NL++H    +G+P  P R  E YIFA+F+EN K    E++FGLF P+  P Y++
Sbjct:  212 PYFSYSGNPGQISLPYSLFTAPNVVVQDGS--RQYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAGAFG---ATYDNAATYLKNLIQHAK--EGSPRKP-RPIETYIFAMFDENNKNPELEKHFGLFSPNKQPKYNL 345          
The following BLAST results are available for this feature:
BLAST of FC930543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13B_HEVBR6.721e-2141.22Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13C_HORVU1.146e-2040.85Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13A_SOYBN1.497e-2044.36Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
GUB2_HORVU2.554e-2047.29Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E131_SOLTU2.554e-2043.66Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E136_ARATH3.336e-2032.21Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E13B_MAIZE7.431e-2044.44Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E133_SOLTU7.431e-2042.96Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E132_SOLTU1.268e-1942.96Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E13B_NICPL2.162e-1942.25Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

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Properties
Property NameValue
Genbank descriptionC34008F09EF PostHarvC1 Citrus clementina cDNA clone C34008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930543 ID=FC930543; Name=FC930543; organism=Citrus clementina; type=EST; length=691bp
CCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGCCTTGTTTAAAC
CAAACGCCGGCGTTTTTGATCCTGCCACTGGGAAGAATTACACCAACATG
TTTGACGCCCAGCTTGATGCTGTTTACTCGGCTATGAAGAAAGTTGGGTA
CGAAGACGTGGACATTGTGGTTGGGGAAACTGGGTGGCCGTCGGCGGGCG
ACCCGAACCAGCCGGAGTCGAACTTGGCCAATGCGCTGTCGTATAATGGG
AATCTCGTGAAGCACGTGAACTCTGGAAAAGGAACGCCTCTGATGCCTAA
CAGGACTTTTGAGGTGTACATTTTCGCCTTATTCAACGAGAACCTGAAAC
CATCCATATCGGAGCAGAATTTCGGGTTGTTTAAACCCGATTTTACGCCG
GTTTATGATGTGGGCATTTTGCGTAATAAACAGGCACAGGGTCCCGCGAA
AGCACCAGGTGGAAGACCTCCCACCGAAGCTCCAGTTGCAAAACCGCCAT
CAGGCGCGGTCACGGGCAGGAAATGGTGCGTGCCAAAATCAGACGCCTCG
GATGCAGCGCTGCAGGCAAACATAGACTACGTGTGCGGCACTGGCGTGGA
TTGCAAGCCTATACAAGCCGGTGGGCCCTGCTTCAATCCGAACATGTGCG
GTCACACGCAGCATACGCCATGACGCCTTCTATCAGCCACG
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