FC930544

Overview
NameFC930544
Unique NameFC930544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 88/140 (62.86%), Postives = 105/140 (75.00%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            A+ V+K T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG  HL LP++N+V EAKA+T ANASVIYVPPPF            +++VVCITEGIP  DMVRVK AL   S+TRLIGPNCPGII  ++C++ +  G
Sbjct:    2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAKAKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRAL-VGSRTRLIGPNCPGIITPDECKIGIMPG 140          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I   +C++ +  G
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPG 140          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.637e-41
Identity = 80/140 (57.14%), Postives = 100/140 (71.43%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG  HLGLP+FNSV EA  ET A+A++I+VP PF            + LVVCITEGIP  DM+ VKA L +    R+IGPNCPG+I   +C++ +  G
Sbjct:    2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPG 141          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.138e-41
Identity = 84/140 (60.00%), Postives = 102/140 (72.86%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DM++VK AL   SKTRLIGPNCPG+I   +C++ +  G
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRAL-IGSKTRLIGPNCPGVITPGECKIGIMPG 140          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.138e-41
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I   +C++ +  G
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPG 140          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.494e-41
Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 2
Query:  269 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            ++K+T+VI QG TGK GTFH +Q +EY TK+VGGV   K GTEHLGLPVF +V+EA+ +T A+ASVIYVP               + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII+ ++C++ +  G
Sbjct:   30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPG 166          

HSP 2 Score: 23.8682 bits (50), Expect = 2.494e-41
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 IGIMPGYIHNLG 696
            IGIMPG+IH  G
Sbjct:  161 IGIMPGHIHKRG 172          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.255e-41
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I   +C++ +
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137          

HSP 2 Score: 26.5646 bits (57), Expect = 3.255e-41
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  646 PGEM*IGIMPGYIHNLG 696
            PGE  IGI PG+IH  G
Sbjct:  130 PGECKIGIQPGHIHKPG 146          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.255e-41
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I   +C++ +
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137          

HSP 2 Score: 26.5646 bits (57), Expect = 3.255e-41
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  646 PGEM*IGIMPGYIHNLG 696
            PGE  IGI PG+IH  G
Sbjct:  130 PGECKIGIQPGHIHKPG 146          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.255e-41
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I   +C++ +
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGI 137          

HSP 2 Score: 26.5646 bits (57), Expect = 3.255e-41
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  646 PGEM*IGIMPGYIHNLG 696
            PGE  IGI PG+IH  G
Sbjct:  130 PGECKIGIQPGHIHKPG 146          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I   +C++ +  G
Sbjct:    2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRAL-VGSKTRLIGPNCPGVITPGECKIGIMPG 140          
The following BLAST results are available for this feature:
BLAST of FC930544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_RICBR7.851e-4462.86Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICTY1.253e-4160.71Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_COXBU1.637e-4157.14Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR2.138e-4160.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICFE2.138e-4160.71Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_CAEEL2.494e-4157.66Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_ECOLI3.255e-4157.66Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL63.255e-4157.66Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO573.255e-4157.66Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICCN4.763e-4160.71Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34008F10EF PostHarvC1 Citrus clementina cDNA clone C34008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930544 ID=FC930544; Name=FC930544; organism=Citrus clementina; type=EST; length=718bp
GGTGCGTTCTTCTGAGAATCTTTTTCTTCAATATATTTTGGAAAAAAAGA
GAGAGACGAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTG
AATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATG
TCGCAGACCCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGT
CGGCGGCGCCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCG
TCTCAGCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGG
CATCACCGGAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACG
GCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCAC
TTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAA
GGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTA
TCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAA
GGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCA
ATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAACCTGG
AGAAATGTAGATTGGCATTATGCCTGGGTATATTCACAACCTGGGCGGGN
TGGAATGTTTCTCGATCT
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