FC930544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.929e-38 Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 2 Query: 224 RYYGSSA---AASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679 R Y S++ AA+ + ++ +T+V+ QG TGK GTFH +QAIEYGT +VGG PKK G HL PVF++V+EA ET A A+ I+VPPP + L VCITEGIPQHDMVR+ + L QSKTRL+GPNCPGII +C++ + G Sbjct: 21 RAYSSNSSPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPG 175
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 5.365e-38 Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ++C++ + G Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPG 140 HSP 2 Score: 25.7942 bits (55), Expect = 5.365e-38 Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1 Query: 661 IGIMPGYIHNLG 696 IGIMPGYIH G Sbjct: 135 IGIMPGYIHKKG 146
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 5.365e-38 Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ++C++ + G Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPG 140 HSP 2 Score: 25.7942 bits (55), Expect = 5.365e-38 Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1 Query: 661 IGIMPGYIHNLG 696 IGIMPGYIH G Sbjct: 135 IGIMPGYIHKKG 146
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34 Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 2 Query: 263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIN 646 + + K+T+VI QG TGK GTFH + EYGT +VGG PKK G HLG PVF SV +A ET A AS I+VPPP + L VCITEGIPQHDM+ + L Q KTRL+GPNCPGIIN Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIIN 158
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.144e-33 Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIINLEKCRLALCLG-IFTTWAGWNVSRS 718 A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG E G+PVFN+V EA ET AN S+I+VP PF ++LVVCITEGIP DM+ VK L +L+GPNCPG+I + ++ + G IF VSRS Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRS 156
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.144e-33 Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670 A+ VD+ T+V+ QGITG G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA E ANASVI+VP PF + ++VCITEGIP HD +++ + T LIGPNCPGII+ K L + Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGI 137
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.042e-32 Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670 A+ VD+NTRVI QGITG G+F ++ ++YGTK+VGGVTP KGG+E G+PV+N+V EA AET A+ S+IYVP F L LVVC+TEGIP +D + + L R+ K+ L+GPNCPG+I+ + ++ L Sbjct: 5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGL 140
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30 Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 2 Query: 263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679 + V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV+++V EA A + +AS+I+VP P + L+V ITEGIP DMVR + + +RLIG NCPGII+ E+ ++ + G Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIGIMPG 139
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.452e-29 Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIINLEKCRLALCLG 679 ++ +D+ T ++ QGITG GTFH ++ I YG+ +VGGVTP KGG H G+PVFN+V EA T A S+ +V PPF L LV IT+GIP DM+RVK L R + +T ++GPNC GII+ K L + G Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPG 144
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29 Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 2 Query: 263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALC-LGIFTTWAGWNVSRS 718 + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E E NAS+I+VP PF LDLVV ITE IP HD +++ +R KT +IGPN PGII +L + IFT VSRS Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPF-AKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRS 157 The following BLAST results are available for this feature:
BLAST of FC930544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930544 ID=FC930544; Name=FC930544; organism=Citrus clementina; type=EST; length=718bpback to top |