FC930544

Overview
NameFC930544
Unique NameFC930544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930544_ssr487 microsatellite FC930544_ssr487:487..498. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:20..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.929e-38
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  224 RYYGSSA---AASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            R Y S++   AA+   + ++ +T+V+ QG TGK GTFH +QAIEYGT +VGG  PKK G  HL  PVF++V+EA  ET A A+ I+VPPP             + L VCITEGIPQHDMVR+ + L  QSKTRL+GPNCPGII   +C++ +  G
Sbjct:   21 RAYSSNSSPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPG 175          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.365e-38
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I  ++C++ +  G
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPG 140          

HSP 2 Score: 25.7942 bits (55), Expect = 5.365e-38
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 IGIMPGYIHNLG 696
            IGIMPGYIH  G
Sbjct:  135 IGIMPGYIHKKG 146          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.365e-38
Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I  ++C++ +  G
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPG 140          

HSP 2 Score: 25.7942 bits (55), Expect = 5.365e-38
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 IGIMPGYIHNLG 696
            IGIMPGYIH  G
Sbjct:  135 IGIMPGYIHKKG 146          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 2
Query:  263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIN 646
            + + K+T+VI QG TGK GTFH   + EYGT +VGG  PKK G  HLG PVF SV +A  ET A AS I+VPPP             + L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGIIN
Sbjct:   31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIIN 158          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.144e-33
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIINLEKCRLALCLG-IFTTWAGWNVSRS 718
            A+ V+K+T+V+ QGITGK G+FH +Q  EYGT++V GVTP KGG E  G+PVFN+V EA  ET AN S+I+VP PF            ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I   + ++ +  G IF       VSRS
Sbjct:    2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRS 156          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.144e-33
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670
            A+ VD+ T+V+ QGITG  G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA  E  ANASVI+VP PF            + ++VCITEGIP HD +++   +     T LIGPNCPGII+  K  L +
Sbjct:    2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGI 137          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.042e-32
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670
            A+ VD+NTRVI QGITG  G+F  ++ ++YGTK+VGGVTP KGG+E  G+PV+N+V EA AET A+ S+IYVP  F            L LVVC+TEGIP +D + +   L R+ K+ L+GPNCPG+I+  + ++ L
Sbjct:    5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGL 140          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 2
Query:  263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            + V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV+++V EA A  + +AS+I+VP P             + L+V ITEGIP  DMVR    + +   +RLIG NCPGII+ E+ ++ +  G
Sbjct:    2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIGIMPG 139          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.452e-29
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIINLEKCRLALCLG 679
            ++ +D+ T ++ QGITG  GTFH ++ I YG+ +VGGVTP KGG  H G+PVFN+V EA   T A  S+ +V PPF            L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII+  K  L +  G
Sbjct:    2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPG 144          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 2
Query:  263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALC-LGIFTTWAGWNVSRS 718
            + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E   E   NAS+I+VP PF            LDLVV ITE IP HD +++    +R  KT +IGPN PGII     +L +    IFT      VSRS
Sbjct:    7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPF-AKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRS 157          
The following BLAST results are available for this feature:
BLAST of FC930544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_NEUCR4.929e-3850.97Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_STAES5.365e-3852.86Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ5.365e-3852.86Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_YEAST3.306e-3455.47Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
SUCD_AQUAE8.144e-3349.03Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD2_ARCFU8.144e-3351.82Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCD1_ARCFU4.042e-3250.36Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCD_THETH6.453e-3047.48Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
MTKB_METEA2.452e-2945.45Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD_METTH7.134e-2948.37Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34008F10EF PostHarvC1 Citrus clementina cDNA clone C34008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930544 ID=FC930544; Name=FC930544; organism=Citrus clementina; type=EST; length=718bp
GGTGCGTTCTTCTGAGAATCTTTTTCTTCAATATATTTTGGAAAAAAAGA
GAGAGACGAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTG
AATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATG
TCGCAGACCCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGT
CGGCGGCGCCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCG
TCTCAGCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGG
CATCACCGGAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACG
GCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCAC
TTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAA
GGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTA
TCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAA
GGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCA
ATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAACCTGG
AGAAATGTAGATTGGCATTATGCCTGGGTATATTCACAACCTGGGCGGGN
TGGAATGTTTCTCGATCT
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