FC930544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28 Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 2 Query: 254 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 643 QP +F+DK+TRV+ QGI G G +H+ EYGTK+VG V PKK G GLP+F ++ E T ANAS+I+VP P + LVVCITE IPQHDM++VK + +++ +LIGPNCPG+I Sbjct: 12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLI 139
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28 Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 2 Query: 254 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 643 QP +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK G+ GLP+F ++ E T ANAS+I+VP P + LVVCITE IPQHDM++VK + +++ +LIGPNCPG+I Sbjct: 12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLI 139
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA1_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28 Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 2 Query: 254 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 643 +P +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK GT GLP+F ++ E T ANAS+I+VP P + LVVCITE IPQHDM++VK + +++ +LIGPNCPG+I Sbjct: 12 KPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGTIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLI 139
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_METJA (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii GN=sucD PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26 Identity = 62/136 (45.59%), Postives = 86/136 (63.24%), Query Frame = 2 Query: 263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670 + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG G+PVF++V EA ET ANASVI+VP PF ++L+V ITE IP HD + ++IGPN PGI + + +L + Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIGPNTPGIASPKVGKLGI 142
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium tuberculosis GN=sucD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22 Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKA-ALNRQSKTRLIGPNCPGIIN 646 ++F+ ++ +VI QGITG T HT + + GT++VGGV +K GT + LPVF SVAEA +T A+ S+I+VPP F + L+V ITEGIP D A L KTR+IGPNCPGII+ Sbjct: 5 SIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIIS 143
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_MYCBO (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium bovis GN=sucD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22 Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 2 Query: 260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKA-ALNRQSKTRLIGPNCPGIIN 646 ++F+ ++ +VI QGITG T HT + + GT++VGGV +K GT + LPVF SVAEA +T A+ S+I+VPP F + L+V ITEGIP D A L KTR+IGPNCPGII+ Sbjct: 5 SIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIIS 143 The following BLAST results are available for this feature:
BLAST of FC930544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930544 ID=FC930544; Name=FC930544; organism=Citrus clementina; type=EST; length=718bpback to top |