FC930544

Overview
NameFC930544
Unique NameFC930544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930544_ssr487 microsatellite FC930544_ssr487:487..498. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:20..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 2
Query:  254 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 643
            QP +F+DK+TRV+ QGI G  G +H+    EYGTK+VG V PKK G    GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I
Sbjct:   12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLI 139          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  254 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 643
            QP +F+DK+T+V+ QGI G  G FH+    +YGTK+VG V PKK G+   GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I
Sbjct:   12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLI 139          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA1_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  254 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 643
            +P +F+DK+T+V+ QGI G  G FH+    +YGTK+VG V PKK GT   GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I
Sbjct:   12 KPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGTIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLI 139          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_METJA (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii GN=sucD PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 62/136 (45.59%), Postives = 86/136 (63.24%), Query Frame = 2
Query:  263 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLAL 670
            + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG    G+PVF++V EA  ET ANASVI+VP PF            ++L+V ITE IP HD +            ++IGPN PGI + +  +L +
Sbjct:    8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIGPNTPGIASPKVGKLGI 142          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium tuberculosis GN=sucD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKA-ALNRQSKTRLIGPNCPGIIN 646
            ++F+ ++ +VI QGITG   T HT + +  GT++VGGV  +K GT           + LPVF SVAEA  +T A+ S+I+VPP F            + L+V ITEGIP  D     A  L    KTR+IGPNCPGII+
Sbjct:    5 SIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIIS 143          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCD_MYCBO (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium bovis GN=sucD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  260 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKA-ALNRQSKTRLIGPNCPGIIN 646
            ++F+ ++ +VI QGITG   T HT + +  GT++VGGV  +K GT           + LPVF SVAEA  +T A+ S+I+VPP F            + L+V ITEGIP  D     A  L    KTR+IGPNCPGII+
Sbjct:    5 SIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLPVFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIIS 143          
The following BLAST results are available for this feature:
BLAST of FC930544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA2_TRIVA1.589e-2849.23Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA3_TRIVA2.076e-2848.46Succinyl-CoA ligase [GDP-forming] subunit alpha-3,... [more]
SUCA1_TRIVA2.076e-2848.46Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCD_METJA1.488e-2645.59Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCTU1.303e-2243.17Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCBO1.303e-2243.17Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34008F10EF PostHarvC1 Citrus clementina cDNA clone C34008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930544 ID=FC930544; Name=FC930544; organism=Citrus clementina; type=EST; length=718bp
GGTGCGTTCTTCTGAGAATCTTTTTCTTCAATATATTTTGGAAAAAAAGA
GAGAGACGAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTG
AATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATG
TCGCAGACCCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGT
CGGCGGCGCCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCG
TCTCAGCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGG
CATCACCGGAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACG
GCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCAC
TTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAA
GGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTA
TCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAA
GGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCA
ATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAACCTGG
AGAAATGTAGATTGGCATTATGCCTGGGTATATTCACAACCTGGGCGGGN
TGGAATGTTTCTCGATCT
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