FC930546

Overview
NameFC930546
Unique NameFC930546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:21..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 134/195 (68.72%), Postives = 166/195 (85.13%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  +++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 134/195 (68.72%), Postives = 166/195 (85.13%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  +++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 134/195 (68.72%), Postives = 166/195 (85.13%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  +++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 134/195 (68.72%), Postives = 166/195 (85.13%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 274.633 bits (701), Expect = 3.642e-73
Identity = 134/193 (69.43%), Postives = 165/193 (85.49%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 4.757e-73
Identity = 134/195 (68.72%), Postives = 165/195 (84.62%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KII V  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIGV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.114e-73
Identity = 133/195 (68.21%), Postives = 164/195 (84.10%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            GF+ L +++PF   LPE++   RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVI+ASNRGT+MELGITPIVTSGL+MQLLAG+K+IEV  +  +DRAL NGAQKL G++I IG+AV YVM+GMYG  S +GAG  +LII+QL  A +IV+ LDELLQKGYGLGSGISLFIATNICE+I+WK+
Sbjct:    2 GFKFLEVIKPFCIILPEIEKPQRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSESADPFYWMRVIMASNRGTLMELGITPIVTSGLIMQLLAGAKLIEV-GDTPKDRALFNGAQKLFGMIITIGQAVVYVMTGMYGDPSDMGAGICLLIIIQLFIASLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKS 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.361e-72
Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +R+I F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVI+ASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+AV YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCAVLPEIQKPERRIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAVVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 3.083e-72
Identity = 132/195 (67.69%), Postives = 164/195 (84.10%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+ I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMTITIGQSIVYVMTGMYGDPSEMGAGVCLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 4.027e-72
Identity = 132/195 (67.69%), Postives = 165/195 (84.62%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTS L+MQLLAG+KIIEV ++ + DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  ++II+QL  AG+IV+ LDELLQKGYGLGSGISL IATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSDLIMQLLAGAKIIEVGDSPK-DRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLVIIIQLFVAGLIVLLLDELLQKGYGLGSGISLLIATNICETIVWKA 195
The following BLAST results are available for this feature:
BLAST of FC930546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
S61A2_MOUSE1.635e-7368.72Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN1.635e-7368.72Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN1.635e-7368.72Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_ONCMY1.635e-7368.72Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_DANRE3.642e-7369.43Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_HEMAM4.757e-7368.72Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_HALRO8.114e-7368.21Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A2_DANRE2.361e-7268.39Protein transport protein Sec61 subunit alpha-like... [more]
S61A1_BOVIN3.083e-7267.69Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_BORSA4.027e-7267.69Protein transport protein Sec61 subunit alpha OS=B... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008F12EF PostHarvC1 Citrus clementina cDNA clone C34008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930546 ID=FC930546; Name=FC930546; organism=Citrus clementina; type=EST; length=722bp
GATAATATTTCAACGTTCAACCCTCTATCCTCCATCTTGCATCGTTGGAG
TTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAATCAAAGCTTGTCGA
TCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGGATTTAGAGTGCT
GCATTTGGTGAGACCGTTTCTTCCATTTTTGCCGGAGGTTCAGTCAGCTG
ACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACTGTCATTTCGCTT
TTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGGCATCCATTCCAC
CACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTCTTGCATCAAACC
GGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTGACTTCTGGACTT
GTGATGCAACTCTTGGCTGGTTCCAAGATTATTGAGGTGGATAACAATGT
TCGTGAGGATCGTGCACTCTTAAATGGGGCACAGAAGCTGTTGGGTATCC
TGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCGGGGATGTATGGA
AGTGTTAGCCAGCTTGGTGCTGGGAATGCTATTCTCATAATCCTCCAACT
TTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGG
GATATGGTTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATCTGT
GAAAGCATTATTTGGAAAGCTT
back to top