FC930546

Overview
NameFC930546
Unique NameFC930546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:21..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 131/193 (67.88%), Postives = 164/193 (84.97%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 131/193 (67.88%), Postives = 164/193 (84.97%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 131/193 (67.88%), Postives = 164/193 (84.97%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 131/193 (67.88%), Postives = 164/193 (84.97%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 131/193 (67.88%), Postives = 164/193 (84.97%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.528e-66
Identity = 118/195 (60.51%), Postives = 158/195 (81.03%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            GFRVL LV+PF PF+PEV + +RK+ F++++++T ++L IFLV S++PLYGI S+ G+DP YW+R++LASNRGT+MELGI+PIV++G+V QLL G+K+I VD + + DR     AQKL  IL+A+G+A  YV++GMYG  S LG G  +L++LQL FAGI+VI LDELLQKGYGLGSGISLF ATN+CE + WKA
Sbjct:    3 GFRVLDLVKPFTPFMPEVIAPERKVAFQQRLMWTGVTLLIFLVMSEIPLYGIASSDGSDPLYWLRMMLASNRGTLMELGISPIVSAGMVFQLLQGTKLITVDMSNKNDRDQFQTAQKLFAILLAVGQATVYVLTGMYGPPSSLGTGVCLLLVLQLVFAGIVVILLDELLQKGYGLGSGISLFTATNVCEQVFWKA 197
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.639e-65
Identity = 121/193 (62.69%), Postives = 157/193 (81.35%), Query Frame = 2 
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            R L LV+PF+PFLPEVQ  + KIPF +K+++T ++L IFLV SQ+PLYGI S+  +DP YW+R+++ASNRGT+MELGITPI++SG+V QLLAG+ +I+V+ +++ DR L   AQKL  ++++IG A  YV +G+YG  S LGAG   L+ILQL  AG+IVI LDELLQKGYGLGSGISLFIATNICESI+WKA
Sbjct:    5 RFLDLVKPFVPFLPEVQQPETKIPFNQKLMWTGLTLLIFLVMSQMPLYGIVSSDTSDPLYWLRMMMASNRGTLMELGITPIISSGMVFQLLAGTHMIDVNLDLKADRELYQTAQKLFAVILSIGTATVYVFTGLYGPPSDLGAGIVFLLILQLVVAGMIVILLDELLQKGYGLGSGISLFIATNICESIMWKA 197
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.795e-65
Identity = 116/195 (59.49%), Postives = 156/195 (80.00%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G R L LV+PF PFLPEVQ+ +RK+PF +K+++T ++L IFLV S++PLYGI+S+  +D  YW+R++LASNRG++MELGITPIV+SG+V QLL G+++IEV+ +++ DR L   AQKL  I++++G+A  YV++GMYG    LG G  +L+I QL  A ++VI LDELLQKGYGLGSGISLFIATNICE I WKA
Sbjct:    3 GVRFLDLVKPFTPFLPEVQAPERKVPFNQKIMWTAVTLMIFLVMSEIPLYGINSSDKSDALYWLRMMLASNRGSLMELGITPIVSSGMVFQLLGGTQLIEVNMDLKSDRELYQTAQKLFAIILSLGQATVYVLTGMYGPPKDLGVGVCLLLIFQLVLAALVVILLDELLQKGYGLGSGISLFIATNICEQIFWKA 197
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_CANAL (Protein transport protein SEC61 subunit alpha OS=Candida albicans GN=SEC61 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.795e-65
Identity = 120/195 (61.54%), Postives = 154/195 (78.97%), Query Frame = 2 
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            GFRVL LV+PF PFLPEV + +RK+ F+++V++T+I+L IFLV S++PLYGI S+  +DP +W+R++LASNRGT+MELGI+PIV+SG++ QLL G+KII VD   + DR     AQKLL IL+A+G+A  YV++GMYG  S LG G   L+ILQL FA  IVI LDELLQKGYGLGSG+SLF ATN CE + WKA
Sbjct:    3 GFRVLDLVKPFSPFLPEVIAPERKVQFQQRVMWTIITLLIFLVMSEIPLYGIASSDSSDPLFWLRMMLASNRGTLMELGISPIVSSGMLFQLLQGTKIIHVDMQNKNDRETFQTAQKLLAILLAVGQATVYVLTGMYGPPSSLGVGVCSLLILQLVFASTIVILLDELLQKGYGLGSGVSLFTATNTCEQVFWKA 197
[Close]
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.463e-63
Identity = 116/194 (59.79%), Postives = 155/194 (79.90%), Query Frame = 2 
Query:  140 FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            FRVL LV+P   +LPEV + +RK+PF +K+++T ++L IFLV S++PLYGI S+  +DP +W+R++LASNRGT+MELGI+PIV+SG+V QLL G+++++V+   + DR     AQKL  IL++IG+A  YV++G+YG  S LG G  +L+ILQL FAGIIVI LDELLQKGYGLGSGISLF+ATNICE I WKA
Sbjct:    4 FRVLDLVKPLTGYLPEVIAPERKVPFNQKLMWTGVTLLIFLVMSEIPLYGIVSSESSDPLFWLRMMLASNRGTLMELGISPIVSSGMVFQLLQGTQLLDVNLESKTDRETFQTAQKLFAILLSIGQATVYVLTGIYGRPSDLGVGVCLLLILQLVFAGIIVILLDELLQKGYGLGSGISLFMATNICEQIFWKA 197
The following BLAST results are available for this feature:
BLAST of FC930546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
S61A1_RAT6.869e-7267.88Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB6.869e-7267.88Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE6.869e-7267.88Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_HUMAN6.869e-7267.88Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_CANFA6.869e-7267.88Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_DEBHA2.528e-6660.51Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_NEUCR1.639e-6562.69Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_YARLI2.795e-6559.49Protein transport protein SEC61 subunit alpha OS=Y... [more]
SC61A_CANAL2.795e-6561.54Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_HANAN4.463e-6359.79Protein transport protein SEC61 subunit alpha OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008F12EF PostHarvC1 Citrus clementina cDNA clone C34008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930546 ID=FC930546; Name=FC930546; organism=Citrus clementina; type=EST; length=722bp
GATAATATTTCAACGTTCAACCCTCTATCCTCCATCTTGCATCGTTGGAG
TTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAATCAAAGCTTGTCGA
TCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGGATTTAGAGTGCT
GCATTTGGTGAGACCGTTTCTTCCATTTTTGCCGGAGGTTCAGTCAGCTG
ACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACTGTCATTTCGCTT
TTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGGCATCCATTCCAC
CACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTCTTGCATCAAACC
GGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTGACTTCTGGACTT
GTGATGCAACTCTTGGCTGGTTCCAAGATTATTGAGGTGGATAACAATGT
TCGTGAGGATCGTGCACTCTTAAATGGGGCACAGAAGCTGTTGGGTATCC
TGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCGGGGATGTATGGA
AGTGTTAGCCAGCTTGGTGCTGGGAATGCTATTCTCATAATCCTCCAACT
TTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGG
GATATGGTTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATCTGT
GAAAGCATTATTTGGAAAGCTT
back to top