FC930546

Overview
NameFC930546
Unique NameFC930546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:21..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.893e-62
Identity = 115/193 (59.59%), Postives = 153/193 (79.27%), Query Frame = 2
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            R L LV+PF PFLPE+ + +RK+PF++K+++T ++L IFLV SQ+PLYGI S+  +DP  W+R+ILA+NRGT+MELGI+PIVTS +++QLL GS++IEV+  ++ DR +    QK L I+IA G+A AYV++GMYG    LGAG  +L+ILQL  A +IV+ LDELLQKGYGLGSGISLFIAT  CE+I WKA
Sbjct:    5 RFLDLVKPFAPFLPEIAAPERKVPFKQKMLWTGVTLLIFLVMSQVPLYGIVSSDSSDPLLWLRMILAANRGTLMELGISPIVTSSMLVQLLVGSQLIEVNMELKSDREMYQLVQKFLAIIIAFGQATAYVLTGMYGRPQDLGAGICLLLILQLAAASLIVLLLDELLQKGYGLGSGISLFIATINCENIFWKA 197          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_ASHGO (Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.258e-57
Identity = 106/193 (54.92%), Postives = 147/193 (76.17%), Query Frame = 2
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            R+L L +PF  FLPEV + +RK+P+ +K+I+T +SL IFLV  Q+PLYGI S+ G+DP  W+R +LASNRGT+MELG++PI+TS ++ Q L G+++++V+   ++DR L   AQK+  I++ +G+A+  V++G YGSVS LG   ++L+ILQL FA  IV+ LDELL KGYGLGSGISLF ATNI E I WKA
Sbjct:    4 RLLDLFKPFEAFLPEVIAPERKVPYNQKLIWTAVSLLIFLVLGQIPLYGIVSSEGSDPLQWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVNLESKQDRELFQIAQKVCAIVLTLGQAIVVVLTGNYGSVSNLGIAISLLLILQLVFASFIVLLLDELLIKGYGLGSGISLFTATNIAEQIFWKA 196          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.659e-57
Identity = 107/193 (55.44%), Postives = 144/193 (74.61%), Query Frame = 2
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            R+L L +PF  FLPEV S +RK+P+ +K+I+T +SL IFLV  Q+PLYGI S   +DP YW+R +LASNRGT+MELG++PI+TS ++ Q L G+++++V  + +EDR L   AQK+  I++  G+A+  VM+G YGS S LG   ++L+I QL FA  IV+ LDELL KGYGLGSGISLF ATNI E+I WKA
Sbjct:    4 RILSLFKPFEAFLPEVISPERKVPYNQKLIWTGVSLLIFLVLGQIPLYGIVSAETSDPLYWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVSLDSKEDRELYQIAQKVCAIILTFGQALVVVMTGNYGSPSDLGIAISLLLIFQLMFASFIVLLLDELLTKGYGLGSGISLFTATNIAENIFWKA 196          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_YEAST (Protein transport protein SEC61 OS=Saccharomyces cerevisiae GN=SEC61 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.425e-55
Identity = 101/193 (52.33%), Postives = 144/193 (74.61%), Query Frame = 2
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            RVL L +PF  FLPEV + +RK+P+ +K+I+T +SL IFL+  Q+PLYGI S+  +DP YW+R +LASNRGT++ELG++PI+TS ++ Q L G++++++    ++DR L   AQK+  I++ +G+A+  VM+G YG+ S LG    +L+I QL FA +IV+ LDELL KGYGLGSGISLF ATNI E I W+A
Sbjct:    5 RVLDLFKPFESFLPEVIAPERKVPYNQKLIWTGVSLLIFLILGQIPLYGIVSSETSDPLYWLRAMLASNRGTLLELGVSPIITSSMIFQFLQGTQLLQIRPESKQDRELFQIAQKVCAIILILGQALVVVMTGNYGAPSDLGLPICLLLIFQLMFASLIVMLLDELLSKGYGLGSGISLFTATNIAEQIFWRA 197          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_KLULA (Protein transport protein SEC61 subunit alpha OS=Kluyveromyces lactis GN=SEC61 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.630e-55
Identity = 101/193 (52.33%), Postives = 142/193 (73.58%), Query Frame = 2
Query:  143 RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            RVL L +PF  +LPEV + +R +P+++K+I+T +SL +FLV  Q+PLYGI S+  +DP YW+R +LASNRGT+MELG++PI+TS ++ Q L G+++++V+   ++DR L   AQK+  IL+  G+A+  V++G YG  S LG   ++L+I QL FA   V+ LDELL KGYGLGSGISLF ATNI E I WKA
Sbjct:    4 RVLDLFKPFEAYLPEVIAPERPVPYKQKLIWTGVSLLVFLVLGQIPLYGIVSSETSDPLYWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVNMENKQDRELYQIAQKVFAILLTFGQAIVVVLTGNYGKPSDLGLAISLLLIFQLIFASFTVLLLDELLSKGYGLGSGISLFTATNIAEQITWKA 196          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_PYRFU (Preprotein translocase subunit secY OS=Pyrococcus furiosus GN=secY PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 71/183 (38.80%), Postives = 121/183 (66.12%), Query Frame = 2
Query:  176 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS-QLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + PEV+   R++P RE+ ++T ++L ++ V +++P+YGI      D F ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + +   EA  +++ G +G V   +    A+L+ILQL   GI++I LDEL+ K +G+GSGISLFIA  + ++I+ ++
Sbjct:   13 WFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISLFIAAGVSQTILTRS 193          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_PYRAB (Preprotein translocase subunit secY OS=Pyrococcus abyssi GN=secY PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32
Identity = 73/183 (39.89%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  176 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS-QLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + PEV+   + +P +EK ++T ++L ++ V +++P+YGI      D F ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + +   EA  +V+ G +G V   +    A L+ILQL F GII+I LDEL+ K +G+GSGISLFIA  + + I+ ++
Sbjct:   13 WFPEVERPKKHVPLKEKFMWTGLALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFLEAAIWVLGGAFGRVGVDVTYAIAALMILQLAFGGIILIVLDELVSK-WGIGSGISLFIAAGVSQRILTRS 193          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_METTH (Preprotein translocase subunit secY OS=Methanobacterium thermoautotrophicum GN=secY PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32
Identity = 74/183 (40.44%), Postives = 116/183 (63.39%), Query Frame = 2
Query:  164 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESII 712
            P    LP+V+S   ++PFREK+ +T I L ++   +Q+PLYG+ S    D F   R +LA N G+++ LGI PIV++ +++QLL G KI+++D +  ED+A   G QKLL I+    EA+ +V++   GS++        ++ILQL   GI++I LDE++ K +G GSG+ LFIA  + + II
Sbjct:   10 PLFSVLPQVKSPGYRVPFREKLKWTGIILVLYFFLAQIPLYGL-SANAVDQFAQFRAVLAGNFGSILTLGIGPIVSASIILQLLVGGKILKLDLSRHEDKAFFQGLQKLLAIVFTFFEALIFVLT---GSLAPSAPQFVWVLILQLTIGGILIIFLDEVVSK-WGFGSGVGLFIAAGVSQEII 187          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_METJA (Preprotein translocase subunit secY OS=Methanocaldococcus jannaschii GN=secY PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 77/182 (42.31%), Postives = 119/182 (65.38%), Query Frame = 2
Query:  164 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESI 709
            P L  +PEV+   ++I F+EK+ +T I L ++ +   + +Y   +   A   +W + I AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL I++   EAV +V +G +G ++ L    A L+I+Q+ F  II+I LDE++ K YG+GSGI LFIA  + ++I
Sbjct:    6 PILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFW-QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGVSQTI 182          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.883e-31
Identity = 70/183 (38.25%), Postives = 117/183 (63.93%), Query Frame = 2
Query:  176 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS-QLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            + PEV+   + +P +EK ++T ++L ++ V +++P+YGI      D F ++RV+LA   G+++ LGI PIVT+G+++QLL GS++I +D    EDR      Q++  + +   EA  +V+ G +G V   +    A L+I+QL   GII+I LDEL+ K +G+GSGISLFIA  + + I+ ++
Sbjct:   13 WFPEVERPKKHVPLKEKFVWTGLALVLYYVLAEIPVYGIPKKI-QDYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSELIRLDLANPEDRRFYQALQRVFSVFMCFFEAAIWVLGGAFGRVGVDVTYTIATLMIIQLALGGIILIVLDELVSK-WGIGSGISLFIAAGVSQRILTRS 193          
The following BLAST results are available for this feature:
BLAST of FC930546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_SCHPO2.893e-6259.59Protein transport protein sec61 subunit alpha OS=S... [more]
SC61A_ASHGO1.258e-5754.92Protein transport protein SEC61 subunit alpha OS=A... [more]
SC61A_CANGA3.659e-5755.44Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_YEAST3.425e-5552.33Protein transport protein SEC61 OS=Saccharomyces c... [more]
SC61A_KLULA7.630e-5552.33Protein transport protein SEC61 subunit alpha OS=K... [more]
SECY_PYRFU4.812e-3338.80Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_PYRAB3.119e-3239.89Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_METTH3.119e-3240.44Preprotein translocase subunit secY OS=Methanobact... [more]
SECY_METJA4.504e-3142.31Preprotein translocase subunit secY OS=Methanocald... [more]
SECY_PYRHO5.883e-3138.25Preprotein translocase subunit secY OS=Pyrococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008F12EF PostHarvC1 Citrus clementina cDNA clone C34008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930546 ID=FC930546; Name=FC930546; organism=Citrus clementina; type=EST; length=722bp
GATAATATTTCAACGTTCAACCCTCTATCCTCCATCTTGCATCGTTGGAG
TTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAATCAAAGCTTGTCGA
TCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGGATTTAGAGTGCT
GCATTTGGTGAGACCGTTTCTTCCATTTTTGCCGGAGGTTCAGTCAGCTG
ACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACTGTCATTTCGCTT
TTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGGCATCCATTCCAC
CACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTCTTGCATCAAACC
GGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTGACTTCTGGACTT
GTGATGCAACTCTTGGCTGGTTCCAAGATTATTGAGGTGGATAACAATGT
TCGTGAGGATCGTGCACTCTTAAATGGGGCACAGAAGCTGTTGGGTATCC
TGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCGGGGATGTATGGA
AGTGTTAGCCAGCTTGGTGCTGGGAATGCTATTCTCATAATCCTCCAACT
TTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGG
GATATGGTTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATCTGT
GAAAGCATTATTTGGAAAGCTT
back to top