FC930546

Overview
NameFC930546
Unique NameFC930546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:21..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_SULAC (Preprotein translocase subunit secY OS=Sulfolobus acidocaldarius GN=secY PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 70/183 (38.25%), Postives = 110/183 (60.11%), Query Frame = 2
Query:  179 LPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG-ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGN---AILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIW 715
            LP V     K     K+++T I L ++L+ + +PLYG+ S+      F   ++I AS++GT+ +LGI P++TSGL+MQ+L GSK+I VD   +E ++    A+K L ++  I      V S ++G V      N    I++++QL  A  I++ LDE++QKG+GLGSG+SLFI   I + I W
Sbjct:   14 LPAVSKPKDKPTLTRKLLWTFIGLIVYLLMASIPLYGVTSSNSFLSNFLAQQIIFASSQGTLAQLGIGPVITSGLIMQILVGSKLINVDLTTQEGKSKFTQAEKALALIFII------VESSLFGYVFTRATSNILLPIIVVVQLIIASYIILLLDEMIQKGWGLGSGVSLFIMAGIMKVIFW 190          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_AERPE (Preprotein translocase subunit secY OS=Aeropyrum pernix GN=secY PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 70/180 (38.89%), Postives = 108/180 (60.00%), Query Frame = 2
Query:  182 PEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMY--GSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIW 715
            P V+  +RK     ++ +T + L ++ + S +PLYGI            R+I AS+ GT+MELGI PIVT+ L++Q+L G+KII++D    E R     AQK+L +  A  EAVA+ + G Y  G+  + G  +  L+ LQL    ++VI  DE++QKG+G+GS ISLFI   + + ++W
Sbjct:   15 PAVRKPERKPTLYRRLAWTGVILVLYFIMSNIPLYGIPPQNIGGQVDLQRIIFASSAGTLMELGIGPIVTASLIIQVLVGAKIIKLDLADPEGRRKFTSAQKVLALAFAALEAVAFTVGGRYWVGTAIEPGPLDYALVSLQLFLGALLVIYFDEVMQKGWGIGSAISLFILAGVAQGVVW 194          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: YGMH_SCHPO (Uncharacterized protein C19G7.17 OS=Schizosaccharomyces pombe GN=SPBC19G7.17 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 71/194 (36.60%), Postives = 111/194 (57.22%), Query Frame = 2
Query:  134 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIW 715
            GG R ++ ++P    LPEV+     +   EK+ +    + ++ + S +P+YG   T   DP    RV+  S+   +M  G+ PI  S  ++Q+LA  K I V+ N+  DR L   AQK++  L+ +  AV YV SG YGS S LG    I++ILQ+   GI+ I L E+++KG+GLGSG  L + ++I  +I+W
Sbjct:    2 GGARFINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDPINNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQKVVSALLYLILAVTYVSSGYYGSFSDLGIFRFIMLILQIFLPGIVCIYLCEIIEKGHGLGSGPVLLLGSHILGNIMW 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_METVA (Preprotein translocase subunit secY OS=Methanococcus vannielii GN=secY PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 70/184 (38.04%), Postives = 117/184 (63.59%), Query Frame = 2
Query:  158 VRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESI 709
            ++P L  +PEV+   + + F+EK+ +T + L ++ +   + +Y   +   A   +W + + AS  GT++ LGI PIVT+G++MQLL GS++I +D +   +RAL  G QKL GI +   EAV +V +G +G V+   +  A++++LQL    I+VI LDE++ + YG+GSGI LFIA  + ++I
Sbjct:    3 IKPILELIPEVKRPLKGVSFKEKIQWTGLVLILYFILGTIDIYMGGAEMPAMFAFW-QTVTASKMGTLITLGIGPIVTAGIIMQLLVGSELISLDLSKPMNRALFQGLQKLFGIFLCFLEAVMFVGAGAFGVVN---STLALILVLQLALGAILVIYLDEIVSR-YGIGSGIGLFIAAGVAQTI 181          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_SULSO (Preprotein translocase subunit secY OS=Sulfolobus solfataricus GN=secY PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 67/182 (36.81%), Postives = 111/182 (60.99%), Query Frame = 2
Query:  176 FLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAV--AYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIW 715
            +LP V     K    +K++++++++ I+L+ +  PLYGI S +        ++I AS  GT+ +LGI PI+T+GL+MQ+LAGSK+I +D N  +DR     AQK L  +  + E+    YV++    +++      A ++I QL  A  +++ LDEL+QKG+GLGSG+SLFI   + + + W
Sbjct:   13 YLPAVTKPKEKPSLGQKLVWSLVAVIIYLIMASTPLYGITSASFFKNLILEQIIFASTTGTLAQLGIGPIITAGLIMQILAGSKLISIDLNDPDDRVKFTEAQKGLAFIFILVESALFGYVLARTSTTINASILFIAGIVIAQLIVATYLILLLDELIQKGWGLGSGVSLFILAGVMKIMFW 194          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SSH1_YEAST (Sec sixty-one protein homolog OS=Saccharomyces cerevisiae GN=SSH1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 72/197 (36.55%), Postives = 115/197 (58.38%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA---DPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYG---SVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGI----SLFIATNI 697
            GFR++ +V+P LP LPEV+    K+PF +K++YT+ +  I+L  +Q PL G+   T     DP Y++R +      T++E G+ P ++SGL++QLLAG K+I+V+  ++ DR L     K+  I+  +     ++ +G +G   SV Q+G     LI  QL  AGI    L E++ KG+G  SG     ++ IATN+
Sbjct:    3 GFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFGDDLSVVQIG-----LINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNL 193          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_ARCFU (Preprotein translocase subunit secY OS=Archaeoglobus fulgidus GN=secY PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 65/196 (33.16%), Postives = 112/196 (57.14%), Query Frame = 2
Query:  146 VLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGM----YGSVSQLGAGNAI---LIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESII 712
            V+  ++P+   +P V+     + FREK  +T   L ++ + S +P++G+ S    D F   R + A + G+++ LGI PIVT+ +++QLL G+ II++D    EDRA     Q+ L  ++   EA+  +  G+        +QLG    I   LI +QL   G++++ +DE++ K +G+GSG+SLFI   I +SI+
Sbjct:    4 VIRALQPYFERIPSVERPKGHVHFREKFGWTAAILLLYFILSNVPVFGL-SPESIDIFAAYRALFAGSTGSIIALGIGPIVTASIILQLLVGAGIIKLDLTNPEDRAAYQDFQRFLVFVMIAVEAIPQIAGGLLKPDLNLAAQLGVSPGIISFLIFIQLFIGGVLIVYMDEVVSK-WGIGSGVSLFILAGIAQSIV 197          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_HALSA (Preprotein translocase subunit secY OS=Halobacterium salinarium GN=secY PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 66/192 (34.38%), Postives = 111/192 (57.81%), Query Frame = 2
Query:  164 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVD-NNVREDRALLNGAQK-LLGILIAIGEAVAYVMSGMYGSVSQLGA-------GNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESII 712
            P L  +P V+  +  +PFR K+ +T   L ++   + +PL+GI  T G D F   R +LA  +GTV++LGI PIVT+ +V+QLL G+ ++ +D +N   D+A+  G QK L+G+++ +  A    +        QL         G  +LI  Q+   GI+++ +DE++ K +G+GSGI LFI   + +S++
Sbjct:    9 PVLTRMPAVERPEGHVPFRRKMYWTGGVLVLYFFLTNVPLWGIQ-TAGNDFFGQFRSLLAGGQGTVLQLGIGPIVTASIVLQLLGGANLLGLDTDNDPRDQAIYQGLQKFLVGVMVVLTGAPMVFLGNFLQPSQQLAQSMPGGAFGVEVLIFAQIAAGGILLLFMDEVISK-WGVGSGIGLFIVAGVSQSLV 198          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_HALVO (Preprotein translocase subunit secY OS=Halobacterium volcanii GN=secY PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 66/194 (34.02%), Postives = 111/194 (57.22%), Query Frame = 2
Query:  164 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKI--IEVDNNVREDRALLNGAQKLL-GILIAIGEAVAYVMSGMYGSVSQ-----LGAGNA---ILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESII 712
            P L  +P V   +  +PFR K+ +T   L ++   + + L+G+ + T  D F   R ILA  +G+V++LGI PIVT+ +V+QLL G+ +  ++ DNN R D+ L  G QKLL G++I +   +  V +G +    Q     LG G      LI  Q+   G++++ +DE++ K +G+GSG+ LFI   + + ++
Sbjct:    9 PVLSRMPAVARPEGHVPFRRKLGWTGGILVLYFFLTNVTLFGLDAATANDLFGQFRSILAGQQGSVLQLGIGPIVTASIVLQLLGGADLLGLDTDNNPR-DQVLYQGLQKLLVGVMICL-TGLPMVFAGNFLPADQAVATSLGIGTVGVKGLIFAQIAVGGVLILFMDEIVSK-WGVGSGVGLFIIAGVSQQLV 199          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SECY_HALMA (Preprotein translocase subunit secY OS=Haloarcula marismortui GN=secY PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 59/192 (30.73%), Postives = 106/192 (55.21%), Query Frame = 2
Query:  164 PFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVD-NNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMY-----GSVSQLGAGNA---ILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESII 712
            P L  +P VQ  +  +PF+ K+ +T   L ++   + + L+G+        F     ILAS +G++M+LGI PIVT+ +V+QLL G+ ++ ++  +   D+ L  G QKLL +++     +  V +G +        + LG G A    LI  Q+   G++++ +DE++ K +G+GSGI LFI   + + ++
Sbjct:    9 PLLVRMPAVQRPEGHVPFKRKLTWTGGVLLLYFFLTNVKLFGLDIDASQQVFGRFSSILASGQGSIMQLGIGPIVTASIVLQLLGGADLLGLNTQDDPRDQILYQGLQKLLVLVMICLTGLPMVFAGGFLPADTAVANSLGIGTAGVQWLIFAQMFVGGVLILFMDEVISK-WGVGSGIGLFIVAGVSQRLV 199          
The following BLAST results are available for this feature:
BLAST of FC930546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SECY_SULAC4.980e-3038.25Preprotein translocase subunit secY OS=Sulfolobus ... [more]
SECY_AERPE4.980e-3038.89Preprotein translocase subunit secY OS=Aeropyrum p... [more]
YGMH_SCHPO1.109e-2936.60Uncharacterized protein C19G7.17 OS=Schizosaccharo... [more]
SECY_METVA2.472e-2938.04Preprotein translocase subunit secY OS=Methanococc... [more]
SECY_SULSO7.191e-2936.81Preprotein translocase subunit secY OS=Sulfolobus ... [more]
SSH1_YEAST1.038e-2736.55Sec sixty-one protein homolog OS=Saccharomyces cer... [more]
SECY_ARCFU4.824e-2533.16Preprotein translocase subunit secY OS=Archaeoglob... [more]
SECY_HALSA5.333e-2434.38Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_HALVO4.992e-2234.02Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_HALMA6.102e-2030.73Preprotein translocase subunit secY OS=Haloarcula ... [more]

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Properties
Property NameValue
Genbank descriptionC34008F12EF PostHarvC1 Citrus clementina cDNA clone C34008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930546 ID=FC930546; Name=FC930546; organism=Citrus clementina; type=EST; length=722bp
GATAATATTTCAACGTTCAACCCTCTATCCTCCATCTTGCATCGTTGGAG
TTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAATCAAAGCTTGTCGA
TCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGGATTTAGAGTGCT
GCATTTGGTGAGACCGTTTCTTCCATTTTTGCCGGAGGTTCAGTCAGCTG
ACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACTGTCATTTCGCTT
TTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGGCATCCATTCCAC
CACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTCTTGCATCAAACC
GGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTGACTTCTGGACTT
GTGATGCAACTCTTGGCTGGTTCCAAGATTATTGAGGTGGATAACAATGT
TCGTGAGGATCGTGCACTCTTAAATGGGGCACAGAAGCTGTTGGGTATCC
TGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCGGGGATGTATGGA
AGTGTTAGCCAGCTTGGTGCTGGGAATGCTATTCTCATAATCCTCCAACT
TTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGG
GATATGGTTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATCTGT
GAAAGCATTATTTGGAAAGCTT
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