FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:957..1630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.559e-62
Identity = 126/219 (57.53%), Postives = 160/219 (73.06%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +LL DKKI+  +DLI VLE   R   P+LII+ED+E EALATLVVNKLRG L   A+KAPGFG+R+   L DIA+LTGG VI +++GL L+ V  ++LG A KV +TKD TTIV     + AV KR+AQI   +E+ + D++REKL ER+AKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TLL L+ K+DAIK  L +DE+
Sbjct:  219 ILLTDKKISIIQDLIPVLEKVARAGRPLLIISEDLEGEALATLVVNKLRGVLNCVAVKAPGFGDRRKAMLQDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLADDEK 437          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.365e-62
Identity = 126/222 (56.76%), Postives = 162/222 (72.97%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LL+   K++N +DL+ VLE   R   P+L+IAED+E EALATLVVNKLRG L   A+KAP FG+R+   L+DIAILTGG +I +++G+ L+ V  +++G A K+ +TKD TTIV DGST+ AV KRVAQIR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AA           TLL LS  + A K  L N EE+VG
Sbjct:  219 LLITSNKLSNLQDLVPVLERVAREGRPLLVIAEDVEGEALATLVVNKLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQLISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.232e-61
Identity = 123/222 (55.41%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL KD TTI+     Q  +  RVAQIR  +E    DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    ++ +K   DN+++ VG
Sbjct:  220 LLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLESATLEHLGNAKRVVLNKDNTTIIDGAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PROMH (60 kDa chaperonin OS=Proteus mirabilis (strain HI4320) GN=groL PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.075e-60
Identity = 125/223 (56.05%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKE-TLDNDEEKVG 673
            +LLVDKK++N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     Q+A+S RVAQIR  IE+A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEK+ RV+DAL+AT+AA            L+R++   +A++E T DN+E+ VG
Sbjct:  220 ILLVDKKVSNIRELLPVLEGVAKANKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTNGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGLGEQEAISGRVAQIRQQIEDATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKRARVDDALHATRAAVEEGVVAGGGTALVRVA---NALREMTGDNEEQTVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.395e-60
Identity = 123/222 (55.41%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI + +DL+ VLED  R   P+LIIAEDIE EALATLVVNK RG L   A+KAP FG+R+   L DIA+LTGG VI +EVGL+L      VLG A K+ ++KDTT IV     +  V+ R+AQIR  +E  + DY+REKL ERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL L+S + +++ +L   +EK+G
Sbjct:  219 ILLTDKKIASIQDLVPVLEDVARAGRPLLIIAEDIEGEALATLVVNKARGVLNTVAVKAPAFGDRRKAILQDIAVLTGGQVISEEVGLSLADANSSVLGKAQKITISKDTTIIVAGDENKADVAARIAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PHOPR (60 kDa chaperonin OS=Photobacterium profundum GN=groL PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.128e-60
Identity = 120/222 (54.05%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKK++N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LT GTVI +E+GL L+KV  E LG A ++ +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R +SKV A     DN+E+ VG
Sbjct:  220 ILLVDKKVSNIRELLPALEGVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKSMLQDIAVLTAGTVISEEIGLELEKVQLEDLGQAKRITITKENTTIIDGAGEETMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVQDALHATRAAVEEGVVAGGGVALIRAASKVAASGLEGDNEEQNVG 441          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.128e-60
Identity = 122/222 (54.95%), Postives = 161/222 (72.52%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+  LE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     Q+A+  R AQI+  IE +  DY++EKL ER+AKLSGGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R ++K+  +  T DN+++ VG
Sbjct:  220 ILLVDKKISNIRELLPTLEGVAKAGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVPGGGVALVRAAAKLSEL--TGDNEDQTVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SALTY (60 kDa chaperonin OS=Salmonella typhimurium GN=groL PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.086e-60
Identity = 122/222 (54.95%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +K    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKG--QNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SALTI (60 kDa chaperonin OS=Salmonella typhi GN=groL PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.086e-60
Identity = 122/222 (54.95%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +K    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKG--QNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SALSV (60 kDa chaperonin OS=Salmonella schwarzengrund (strain CVM19633) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.086e-60
Identity = 122/222 (54.95%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +K    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKG--QNEDQNVG 439          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_GLOVI2.559e-6257.5360 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_SYNJA4.365e-6256.7660 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH60_PSEMY8.232e-6155.4160 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH60_PROMH1.075e-6056.0560 kDa chaperonin OS=Proteus mirabilis (strain HI4... [more]
CH602_SYNP62.395e-6055.4160 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_PHOPR3.128e-6054.0560 kDa chaperonin OS=Photobacterium profundum GN=g... [more]
CH60_ALTMD3.128e-6054.9560 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH60_SALTY4.086e-6054.9560 kDa chaperonin OS=Salmonella typhimurium GN=gro... [more]
CH60_SALTI4.086e-6054.9560 kDa chaperonin OS=Salmonella typhi GN=groL PE=3... [more]
CH60_SALSV4.086e-6054.9560 kDa chaperonin OS=Salmonella schwarzengrund (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
back to top