FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHESW (60 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 119/219 (54.34%), Postives = 160/219 (73.06%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+ A  E L+ D++
Sbjct:  220 VLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKI-AELEVLNEDQK 437          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHESR (60 kDa chaperonin OS=Shewanella sp. (strain MR-7) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 118/222 (53.15%), Postives = 162/222 (72.97%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++  + N+++K G
Sbjct:  220 VLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIADVE--VANEDQKHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHESM (60 kDa chaperonin OS=Shewanella sp. (strain MR-4) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 118/222 (53.15%), Postives = 162/222 (72.97%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++  + N+++K G
Sbjct:  220 VLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIADVE--VANEDQKHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHESA (60 kDa chaperonin OS=Shewanella sp. (strain ANA-3) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 118/222 (53.15%), Postives = 162/222 (72.97%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++  + N+++K G
Sbjct:  220 VLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIADVE--VANEDQKHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHEPC (60 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 119/219 (54.34%), Postives = 160/219 (73.06%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  +  RV+QI+  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+ A  E L+ D++
Sbjct:  220 VLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKI-AELEVLNEDQK 437          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEA6 (60 kDa chaperonin OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 119/222 (53.60%), Postives = 161/222 (72.52%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKK++N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+A LTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     ++A+  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+++  G
Sbjct:  220 ILLVDKKVSNIRELLPTLEAVAKASKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDLATLTGGTVISEEIGLELEKVTLEDLGTAKRVVINKDNTTVVDGAGEEEAIQGRVAQIRAQIEESSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALVRAASKIVDLQG--DNEDQTHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_KLEOR (60 kDa chaperonin (Fragment) OS=Klebsiella ornithinolytica GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 118/222 (53.15%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKK++N R+++ VLE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG
Sbjct:  220 ILLADKKVSNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TAQNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ERWAP (60 kDa chaperonin (Fragment) OS=Erwinia aphidicola GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 117/222 (52.70%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGGTVI +E+G+ L+K G E +G A +VV+ KDTT I+     +  ++ RV QIR  IE A  DY+REKL ER+AKL+GGVAV++VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGMELEKAGLEDMGQAKRVVINKDTTIIIDGTGEEATINGRVTQIRQQIEEATSDYDREKLQERVAKLAGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKLAELRG--QNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_AERHH (60 kDa chaperonin OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=groL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 116/222 (52.25%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKK++N R+++ VLE   +   P++I+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVG+ L+K   E LG A ++V+TK+ TTI+        +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  ++   DN+++ VG
Sbjct:  220 ILLVDKKVSNIREMLPVLEGVAKAGKPLIIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGMELEKATLEDLGRAKRIVITKENTTIIDGVGDASLIESRVAQIRQQIEETSSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLRG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_YERE8 (60 kDa chaperonin OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 120/222 (54.05%), Postives = 157/222 (70.72%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     + A+  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +S + A     DN+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAASAITAAGLKGDNEDQNVG 441          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SHESW4.517e-5954.3460 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH60_SHESR4.517e-5953.1560 kDa chaperonin OS=Shewanella sp. (strain MR-7) ... [more]
CH60_SHESM4.517e-5953.1560 kDa chaperonin OS=Shewanella sp. (strain MR-4) ... [more]
CH60_SHESA4.517e-5953.1560 kDa chaperonin OS=Shewanella sp. (strain ANA-3)... [more]
CH60_SHEPC4.517e-5954.3460 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH60_PSEA64.517e-5953.6060 kDa chaperonin OS=Pseudoalteromonas atlantica (... [more]
CH60_KLEOR4.517e-5953.1560 kDa chaperonin (Fragment) OS=Klebsiella ornithi... [more]
CH60_ERWAP4.517e-5952.7060 kDa chaperonin (Fragment) OS=Erwinia aphidicola... [more]
CH60_AERHH4.517e-5952.2560 kDa chaperonin OS=Aeromonas hydrophila subsp. h... [more]
CH60_YERE85.899e-5954.0560 kDa chaperonin OS=Yersinia enterocolitica serot... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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