FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SERRU (60 kDa chaperonin (Fragment) OS=Serratia rubidaea GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 119/222 (53.60%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKK++N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+G+ L+K   E LG A +VV+ KDTT I+     +  +  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +K   DN+++ VG
Sbjct:  220 ILLADKKVSNIRELLPVLEAVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGMELEKATLEDLGQAKRVVINKDTTIIIDGIGDEATIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIAELKG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PECCC (60 kDa chaperonin (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 118/222 (53.15%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P++I+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+GL L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  +E A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL AT+AA            L+R+++K+ ++  T  N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLVIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGTGEEAAIQGRVAQIRQQVEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALAATRAAVEEGVVAGGGVALVRVAAKLASL--TAQNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_KLEP7 (60 kDa chaperonin OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 119/222 (53.60%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEESAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TGQNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_KLEP3 (60 kDa chaperonin OS=Klebsiella pneumoniae (strain 342) GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 119/222 (53.60%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEESAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TGQNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_HAEPS (60 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 123/223 (55.16%), Postives = 162/223 (72.65%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKV-DAIKETLDNDEEKVG 673
            +LLVDKKI+N R+++ VLE   +   P+LIIAEDIE EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV++KD TTI+     +  +  RVAQIR  IE++  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R +SKV D +K   DN+E+ VG
Sbjct:  220 ILLVDKKISNIREILPVLEAVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATIEELGQAKRVVISKDNTTIIDGVGDEVQIKARVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIIAGGGVALVRAASKVADVVKG--DNEEQNVG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ENTAE (60 kDa chaperonin (Fragment) OS=Enterobacter aerogenes GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 119/222 (53.60%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKIAGL--TGQNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_YEREN (60 kDa chaperonin OS=Yersinia enterocolitica GN=groL PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.705e-59
Identity = 120/222 (54.05%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     + A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +S + A     DN+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAASAITAAGLKGDNEDQNVG 441          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ALCBS (60 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groL PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.705e-59
Identity = 123/222 (55.41%), Postives = 155/222 (69.82%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+  LE+  +   P+LIIAEDIE EALATLVVN +RG +K AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LG A KV + K+ TTIV     Q  +  RV QIR  IEN+  DY++EKL ER+AKL+GGVAVI++GA TE E+KEKK RV+DAL+AT+AA            L+R  + V  IK   DNDE+  G
Sbjct:  219 ILLVDKKISNIRELLPALENVAKAGKPLLIIAEDIEGEALATLVVNNMRGIIKCAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLENASLEDLGTAKKVNIDKENTTIVDGAGQQADIDGRVEQIRKEIENSSSDYDKEKLQERVAKLAGGVAVIKIGAATEIEMKEKKARVDDALHATRAAVEEGVVPGGGVALVRALANVGTIKG--DNDEQNAG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ACTSZ (60 kDa chaperonin OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=groL PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.705e-59
Identity = 122/222 (54.95%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+ KD TTI+     +  +  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK  A  +  DN+E+ VG
Sbjct:  220 ILLVDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKAALEDLGQAKRVVINKDNTTIIDGVGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKAAANLQG-DNEEQNVG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHEHH (60 kDa chaperonin OS=Shewanella halifaxensis (strain HAW-EB4) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.006e-58
Identity = 116/219 (52.97%), Postives = 159/219 (72.60%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +LLVDKK++N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +V++TKD TTI+     +  +  RVAQI+   E +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  + E L+ D++
Sbjct:  220 ILLVDKKVSNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGNGEETQIKARVAQIKIQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIGEV-EVLNEDQK 437          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SERRU5.899e-5953.6060 kDa chaperonin (Fragment) OS=Serratia rubidaea ... [more]
CH60_PECCC5.899e-5953.1560 kDa chaperonin (Fragment) OS=Pectobacterium car... [more]
CH60_KLEP75.899e-5953.6060 kDa chaperonin OS=Klebsiella pneumoniae subsp. ... [more]
CH60_KLEP35.899e-5953.6060 kDa chaperonin OS=Klebsiella pneumoniae (strain... [more]
CH60_HAEPS5.899e-5955.1660 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH60_ENTAE5.899e-5953.6060 kDa chaperonin (Fragment) OS=Enterobacter aerog... [more]
CH60_YEREN7.705e-5954.0560 kDa chaperonin OS=Yersinia enterocolitica GN=gr... [more]
CH60_ALCBS7.705e-5955.4160 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH60_ACTSZ7.705e-5954.9560 kDa chaperonin OS=Actinobacillus succinogenes (... [more]
CH60_SHEHH1.006e-5852.9760 kDa chaperonin OS=Shewanella halifaxensis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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