FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_METFK (60 kDa chaperonin OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.006e-58
Identity = 121/222 (54.50%), Postives = 157/222 (70.72%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N RDL+  LE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGGTVI +EVGL+L+KV  E LG A +V + K+ TTI+    +++ +  R+ QI+  IE+A  DY+REKL ER+AKL+GGVAVI+VGA TETE+KEKK RVEDAL+AT+AA            LLR  S +  +K   DN ++  G
Sbjct:  220 VLLYDKKISNIRDLLPTLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKAVAVKAPGFGDRRKAMLEDIAILTGGTVIAEEVGLSLEKVTLENLGQAKRVEIGKENTTIIDGAGSENNIKVRIDQIKKQIEDATSDYDREKLQERVAKLAGGVAVIKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARSSIKELKG--DNPDQDAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ENTAM (60 kDa chaperonin (Fragment) OS=Enterobacter amnigenus GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.006e-58
Identity = 117/222 (52.70%), Postives = 159/222 (71.62%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E +G A +V++ KDTTTI+     + A+  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R++SK+  ++    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDMGQAKRVIINKDTTTIIDGVGEEAAIQGRVGQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALIRVASKLSELRG--QNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ENT38 (60 kDa chaperonin OS=Enterobacter sp. (strain 638) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.006e-58
Identity = 117/222 (52.70%), Postives = 159/222 (71.62%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E +G A +V++ KDTTTI+     + A+  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R++SK+  ++    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDMGQAKRVIINKDTTTIIDGVGEEAAIQGRVGQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALIRVASKLSELRG--QNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_AERS4 (60 kDa chaperonin OS=Aeromonas salmonicida (strain A449) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.006e-58
Identity = 116/222 (52.25%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKK++N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGGTVI +EVG+ L+K   E LG A ++V+TK+ TTI+        +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  ++   DN+++ VG
Sbjct:  220 ILLVDKKVSNIREMLPVLEGVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAMLTGGTVISEEVGMELEKATLEDLGRAKRIVITKENTTIIDGVGDAALIESRVAQIRQQIEETSSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLRG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHEDO (60 kDa chaperonin OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 117/219 (53.42%), Postives = 160/219 (73.06%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+        ++ RVAQI+  +E++  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++S +  I E L+ D++
Sbjct:  220 ILLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGSGEHTQITSRVAQIKQQMEDSSSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASMIADI-EVLNEDQK 437          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SERFI (60 kDa chaperonin (Fragment) OS=Serratia ficaria GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 119/222 (53.60%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     +  +  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++ K+  +K   DN+++ VG
Sbjct:  220 ILLADKKISNIRELLPVLEAVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGLELEKATLEDLGQAKRVVINKDTTIIIDGVGDEATIQGRVTQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVAGKIAGLKG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_MANSM (60 kDa chaperonin OS=Mannheimia succiniciproducens (strain MBEL55E) GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 122/222 (54.95%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+ KD TTI+     +  +  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK  A  +  DN+E+ VG
Sbjct:  220 ILLVDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKAAASLQG-DNEEQNVG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_KLEPN (60 kDa chaperonin OS=Klebsiella pneumoniae GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 118/222 (53.15%), Postives = 160/222 (72.07%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AK++GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG
Sbjct:  219 ILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEESAIQGRVAQIRKQIEEATSDYDREKLQERVAKVAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TGQNEDQNVG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_KLEOX (60 kDa chaperonin (Fragment) OS=Klebsiella oxytoca GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 118/222 (53.15%), Postives = 159/222 (71.62%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVTQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TAQNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_HAMD5 (60 kDa chaperonin OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=groL PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 118/222 (53.15%), Postives = 157/222 (70.72%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N RD++++LE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+ + L DIA+LT G VI +E G +L+K  +E LG A +VV+TKD TTI+     +  +  RV  IR  IENA  DY++EKL ER+AKLSGGVAVI+VGA TE  +KEKK RVEDAL AT+AA            L+R++SK+       DN+++ VG
Sbjct:  220 ILLVDKKISNIRDMLSILEVVAKEGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKEMLQDIAVLTHGHVISEETGDSLEKATQENLGKAKRVVITKDATTIIDGAGEKSRIEARVQNIRKQIENATSDYDKEKLQERVAKLSGGVAVIKVGAPTEIAMKEKKARVEDALQATRAAVEEGVVPGGGVALIRVASKIANSSLKGDNEDQNVG 441          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METFK1.006e-5854.5060 kDa chaperonin OS=Methylobacillus flagellatus (... [more]
CH60_ENTAM1.006e-5852.7060 kDa chaperonin (Fragment) OS=Enterobacter amnig... [more]
CH60_ENT381.006e-5852.7060 kDa chaperonin OS=Enterobacter sp. (strain 638)... [more]
CH60_AERS41.006e-5852.2560 kDa chaperonin OS=Aeromonas salmonicida (strain... [more]
CH60_SHEDO1.314e-5853.4260 kDa chaperonin OS=Shewanella denitrificans (str... [more]
CH60_SERFI1.314e-5853.6060 kDa chaperonin (Fragment) OS=Serratia ficaria G... [more]
CH60_MANSM1.314e-5854.9560 kDa chaperonin OS=Mannheimia succiniciproducens... [more]
CH60_KLEPN1.314e-5853.1560 kDa chaperonin OS=Klebsiella pneumoniae GN=groL... [more]
CH60_KLEOX1.314e-5853.1560 kDa chaperonin (Fragment) OS=Klebsiella oxytoca... [more]
CH60_HAMD51.314e-5853.1560 kDa chaperonin OS=Hamiltonella defensa subsp. A... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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