FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_THISH (60 kDa chaperonin OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 119/224 (53.12%), Postives = 157/224 (70.09%), Query Frame = 2
Query:    2 CKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            C +LL DKKI+N RDL+ VLE   +   P+LIIAEDIE EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +EVGL+L+K   + LG A ++V+TK+ +TI+      D +  RV QIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    + ++K    N ++ +G
Sbjct:  218 CFVLLYDKKISNIRDLLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGQVISEEVGLSLEKASLDDLGQAKRIVVTKENSTIIDGAGKPDEIKGRVEQIRAQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQALKSLKGA--NHDQDIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEPK (60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 118/222 (53.15%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + +  +K   DN+++ VG
Sbjct:  220 LLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALAAIIDLKG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEP1 (60 kDa chaperonin OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 118/222 (53.15%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + +  +K   DN+++ VG
Sbjct:  220 LLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALAAIVDLKG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_MARAV (60 kDa chaperonin OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 123/225 (54.67%), Postives = 160/225 (71.11%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSS---KVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ VLE   +   P+ IIAEDIE EALATLVVN +RG +K+ A+KAPGFG+R+ + L DIAILTGGTVI +EVGL L+    + LG A +V +TK+ TTI+G    +  +S RV QIR  IE++  DY++EKL ER+AKL+GGVAVI+VGA +E E+KEKK RVEDAL++T+AA           TL+R  +   KVDAI     NDE+K G
Sbjct:  220 ILLVDKKISNIRELLPVLEAVAKAGKPLQIIAEDIEGEALATLVVNNMRGIVKVNAVKAPGFGDRRKEMLQDIAILTGGTVISEEVGLTLENTTLDDLGTAKRVNVTKENTTIIGGAGAEADISARVEQIRKQIEDSSSDYDKEKLQERVAKLAGGVAVIKVGAGSEVEMKEKKARVEDALHSTRAAVEEGIVAGGGVTLIRAIAALDKVDAI-----NDEQKAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEE4 (60 kDa chaperonin OS=Pseudomonas entomophila (strain L48) GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 119/222 (53.60%), Postives = 155/222 (69.82%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + +  +K   DN+E+ VG
Sbjct:  220 LLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADGDIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALAAIADLKG--DNEEQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_HAEDU (60 kDa chaperonin OS=Haemophilus ducreyi GN=groL PE=3 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 119/222 (53.60%), Postives = 159/222 (71.62%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            ++LVDKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+TKD TTI+     +  +  RV QIR  IE++  DY++EKL ER+AKL+GGVAVI+VGA TE  +KEKK RV+DAL+AT+AA            L+R ++KV A   T DN+E+ VG
Sbjct:  220 IILVDKKISNIREILPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVITKDNTTIIDGIGDEAQIKARVVQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEKKDRVDDALHATRAAVEEGIVPGGGVALVRAANKVSATL-TGDNEEQNVG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_AGGAC (60 kDa chaperonin OS=Aggregatibacter actinomycetemcomitans GN=groL PE=1 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 118/222 (53.15%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A ++V+ KD TTI+     +  +  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R + +V  ++   +N+E+ VG
Sbjct:  220 ILLVDKKISNIRELLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEDLGQAKRIVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAAGRVVGLQG--ENEEQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.523e-58
Identity = 117/222 (52.70%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKI+  +DL+ +LE  ++   P+LIIAED+E EALATLVVNKLRG L++AA+KAPGFG+R+   L+DIAILTGG V+ +E+G  L+    E+LG A +V + K+ TTI+    + +A+  RVA I+  IE    D++REKL ER+AKL+GGVAVI+VGA TE ELKEKKLR+EDALNAT+AA            LL+    +D + +TL+ D EKVG
Sbjct:  220 ILITDKKISAVQDLLPILEKVVQRGKPLLIIAEDVEGEALATLVVNKLRGTLQVAAVKAPGFGDRRKAMLEDIAILTGGEVVSEELGRKLENATIEMLGQARQVRIEKEKTTIIDGAGSSEAIKNRVAAIKRQIEETTSDFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKLRIEDALNATRAAVEEGIVAGGGVALLQTQKAIDELIKTLEGD-EKVG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SODGM (60 kDa chaperonin OS=Sodalis glossinidius (strain morsitans) GN=groL PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.523e-58
Identity = 117/222 (52.70%), Postives = 158/222 (71.17%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +KIAA+KAPGFG+R+   L DIAILT GTVI +E+GL L+K   E +G A +VV+TKDTTTI+     +  +  RV QI    + A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R+++++  ++   DN+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKIAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGLELEKATLEDMGQAKRVVITKDTTTIIDGEGDKALIDSRVTQINQQRDEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVANRIAELRG--DNEDQNVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.523e-58
Identity = 122/223 (54.71%), Postives = 160/223 (71.75%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL L+    E LGNA +V+L+K+ TTI+ DG+  DA +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + +  +K   DN+++ VG
Sbjct:  220 LLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLTLETTTLEHLGNAKRVILSKENTTII-DGAGVDADIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALAAIVDLKG--DNEDQNVG 439          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THISH3.824e-5853.1360 kDa chaperonin OS=Thioalkalivibrio sp. (strain ... [more]
CH60_PSEPK3.824e-5853.1560 kDa chaperonin OS=Pseudomonas putida (strain KT... [more]
CH60_PSEP13.824e-5853.1560 kDa chaperonin OS=Pseudomonas putida (strain F1... [more]
CH60_MARAV3.824e-5854.6760 kDa chaperonin OS=Marinobacter aquaeolei (strai... [more]
CH60_PSEE44.994e-5853.6060 kDa chaperonin OS=Pseudomonas entomophila (stra... [more]
CH60_HAEDU4.994e-5853.6060 kDa chaperonin OS=Haemophilus ducreyi GN=groL P... [more]
CH60_AGGAC4.994e-5853.1560 kDa chaperonin OS=Aggregatibacter actinomycetem... [more]
CH60_SYMTH6.523e-5852.7060 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_SODGM6.523e-5852.7060 kDa chaperonin OS=Sodalis glossinidius (strain ... [more]
CH60_PSEPW6.523e-5854.7160 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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