FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SALG2 (60 kDa chaperonin OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.336e-60
Identity = 122/222 (54.95%), Postives = 160/222 (72.07%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +K    N+++ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGGEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKG--QNEDQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEU5 (60 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.336e-60
Identity = 123/222 (55.41%), Postives = 158/222 (71.17%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL K+ TTI+     Q  +  RVAQIR  IE+   DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    +  +K   DN+++ VG
Sbjct:  220 LLLVDKKISNIRELLPVLEGVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLETATLEHLGNAKRVVLNKENTTIIDGAGAQADIEARVAQIRKQIEDTTSDYDKEKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAISELKG--DNEDQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.336e-60
Identity = 122/222 (54.95%), Postives = 161/222 (72.52%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ VLE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +E+GL L+K   E LG A +V +TK+ +TI+     Q A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+ ++    DN+E+ VG
Sbjct:  220 ILLVDKKISNIRELLPVLEGVAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSL--VGDNEEQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.336e-60
Identity = 122/222 (54.95%), Postives = 161/222 (72.52%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ VLE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +E+GL L+K   E LG A +V +TK+ +TI+     Q A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+ ++    DN+E+ VG
Sbjct:  220 ILLVDKKISNIRELLPVLEGVAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSL--VGDNEEQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SHELP (60 kDa chaperonin OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.969e-60
Identity = 121/222 (54.50%), Postives = 162/222 (72.97%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+L+ +LE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q+ +S RVAQI+   E +  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +   + N+++K G
Sbjct:  220 ILLVDKKISNIRELLPILEGLAKTGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEQEQISARVAQIKIQAEESTSDYDREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIGEL--DVANEDQKHG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ESCF3 (60 kDa chaperonin OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.969e-60
Identity = 122/222 (54.95%), Postives = 160/222 (72.07%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+E+ VG
Sbjct:  220 ILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEEQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ERWT9 (60 kDa chaperonin OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.969e-60
Identity = 118/222 (53.15%), Postives = 163/222 (73.42%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGGTVI +E+G+ L+K G E +G A +VV++KDTTTI+     + A+S RV QIR  IE+A  DY+REKL ER+AKL+GGVAV++VGA TE E+KEKK RVEDAL+AT+AA            L+R+++ +  ++    N+++ VG
Sbjct:  220 ILLADKKISNIRELLPVLEAVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGMELEKAGLEDMGQAKRVVISKDTTTIIDGTGEEVAISGRVTQIRQQIEDATSDYDREKLQERVAKLAGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAMLTELRG--QNEDQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 9.102e-60
Identity = 122/222 (54.95%), Postives = 157/222 (70.72%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    ++ +K   DN+E+ VG
Sbjct:  220 LLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEEQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.102e-60
Identity = 122/222 (54.95%), Postives = 157/222 (70.72%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    ++ +K   DN+E+ VG
Sbjct:  220 LLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEEQNVG 439
[Close]
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.102e-60
Identity = 122/222 (54.95%), Postives = 157/222 (70.72%), Query Frame = 2 
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    ++ +K   DN+E+ VG
Sbjct:  220 LLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEEQNVG 439
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SALG25.336e-6054.9560 kDa chaperonin OS=Salmonella gallinarum (strain... [more]
CH60_PSEU55.336e-6055.4160 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH602_VIBC35.336e-6054.9560 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH601_VIBCH5.336e-6054.9560 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH60_SHELP6.969e-6054.5060 kDa chaperonin OS=Shewanella loihica (strain AT... [more]
CH60_ESCF36.969e-6054.9560 kDa chaperonin OS=Escherichia fergusonii (strai... [more]
CH60_ERWT96.969e-6053.1560 kDa chaperonin OS=Erwinia tasmaniensis (strain ... [more]
CH60_PSEAE9.102e-6054.9560 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB9.102e-6054.9560 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA89.102e-6054.9560 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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