FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_SYNFM (60 kDa chaperonin 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.320e-55
Identity = 118/219 (53.88%), Postives = 148/219 (67.58%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +L+ +KKI+N +DL+ VLE   +   P+LIIAED+E EALATLVVNKLRG L + A+KAPGFG+R+   LDDIAILTGG VI +E G+ L+ VG   LG A  + + KD TTIV     + A+  RV QIRT I+    DY+REKL ER+AK+ GGVAVI VGA TETE+KEKK RVEDALNAT+AA             LR    + A+   L+ DE+
Sbjct:  219 ILINEKKISNMKDLLPVLEQIAKMGRPLLIIAEDVEGEALATLVVNKLRGTLHVCAVKAPGFGDRRKAMLDDIAILTGGQVISEEKGIKLESVGLNDLGKAKTIRIDKDNTTIVDGAGDRKALEGRVRQIRTQIDETTSDYDREKLQERLAKMVGGVAVISVGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVAYLRCLGALGAV--NLEGDEK 435          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_RHISN (60 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR234) GN=groL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.320e-55
Identity = 115/222 (51.80%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LL+ +KK++N + L+ VLE  ++   P+LIIAED+E EALAT VVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGT I +++G+ L+ V   +LG A KVV+ K+ TTIV    ++  +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR    +D+I+   +N ++K G
Sbjct:  220 LLIHEKKLSNLQALLPVLESVVQSGKPLLIIAEDVEGEALATPVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLNMLGRAKKVVVEKENTTIVDGAGSKSEIQGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDAMHATRAAVEEGVLPGGGVALLRAVKALDSIR--TENADQKHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_AZOSB (60 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) GN=groL1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.320e-55
Identity = 116/222 (52.25%), Postives = 149/222 (67.12%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N RDL+ VLE   +   P+LIIAED++ EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +EVGL L+K   + LG A ++ + K+ T I+        +  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR  + +  +K   DN ++  G
Sbjct:  220 VLLFDKKISNIRDLLPVLEQVAKAGRPLLIIAEDVDGEALATLVVNNIRGILKTCAVKAPGFGDRRKAMLEDIAILTGGQVIAEEVGLTLEKATLQDLGQAKRIEIGKENTIIIDGAGEASRIEARVKQIRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARASLAGLKG--DNHDQDAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 117/222 (52.70%), Postives = 152/222 (68.47%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKK++  + LI VLE   +   PIL+IAED+E EAL TLV+NKL+G L   A+KAPGFG+R+   L DIAILTGGTVI DE+G+ L+ V  E LG A  V + KD T I+G     + + KR+AQI++ IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TL+R    V+ + + LD D EKVG
Sbjct:  218 ILITDKKLSAVKPLIPVLEKVAQTGKPILVIAEDVEGEALTTLVLNKLKGTLSACAVKAPGFGDRRKAMLQDIAILTGGTVISDELGINLEDVAIEDLGRADIVRVKKDDTIIIGGKGNPEEIKKRIAQIKSQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGD-EKVG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_SULNB (60 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-1) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 117/218 (53.67%), Postives = 153/218 (70.18%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L+ D KIT+ +DLI VLE   +   P+LII++D+E EALATLV+N+L+G L IAA+KAPGFG+RK + L DIAILTG  VI +E+GL+LDK   + LG A +VV+ KD T IV       AV  RVA+I+  +EN   +Y++EKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+ATKAA            L + S    A+K  L++DE
Sbjct:  219 ILITDSKITSLKDLIPVLEQIQQSGRPLLIISDDLEGEALATLVLNRLKGVLNIAAVKAPGFGDRKKEMLKDIAILTGANVITEELGLSLDKATLDDLGQAGRVVIDKDNTVIVDGKGDSAAVDARVAEIKIQVENTTSEYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVDEGIVIGGGAALAKASK---AVKLDLEHDE 433          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 113/209 (54.07%), Postives = 152/209 (72.73%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDA 634
            +LL +KK++N + L+ VLE  ++ + P++IIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGG VI +++G+ L+ V  ++LG A KV ++K+ TTIV     +  +  RV+QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DALNAT+AA            LLR S+K+ A
Sbjct:  220 ILLHEKKLSNLQALLPVLEAVVQTSKPLVIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLDMLGRAKKVSISKENTTIVDGAGQKAEIDARVSQIKQQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGTALLRASAKISA 428          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 112/222 (50.45%), Postives = 157/222 (70.72%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL +KK+++ + ++ +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG+A +V +TKD TTIV     +  +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++ +  +D ++    N+++ +G
Sbjct:  220 ILLHEKKLSSLQPMVPLLESVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGSAKRVSITKDETTIVDGAGAKAEIEARVAQIRNQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAAKHLDGLEGA--NNDQNIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 114/222 (51.35%), Postives = 150/222 (67.57%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKI+N ++L+ +LE + +   P+LIIAEDIE EALATLVVNKLRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG A  V L KD TT+V      DA+  R+ +I+  IE +  DY+ EKL ER+AKLSGGVAVI +GA TE E+KEKK RVEDAL+AT+AA            L+R    ++      DN+++K+G
Sbjct:  220 ILIYDKKISNMKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATLSYLGQAGSVSLDKDNTTLVEGKGASDAIKARINEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVINIGASTEVEMKEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLN--NAQADNEDQKIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_CAMLR (60 kDa chaperonin OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 114/207 (55.07%), Postives = 145/207 (70.05%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKV 628
            +LL DKKI N +DL+ +LE   +   P+LIIAEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGG VI +E+G  L+    + LG AS V++ KD TTIV     +  ++ R+ QI+  I     DY+REKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+ATKAA            L++  SK+
Sbjct:  219 ILLFDKKIANLKDLLPILEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESASIQDLGQASSVIIDKDNTTIVNGAGEKANINARINQIKAQIAETSSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKSKI 425          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_CAMC1 (60 kDa chaperonin OS=Campylobacter concisus (strain 13826) GN=groL PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.030e-55
Identity = 116/208 (55.77%), Postives = 144/208 (69.23%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVD 631
            +LL DKKITN +DL+ VLE   +   P+LIIAEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGG VI +E+G  L+      LG AS VV+ KD TTIV     + A+  R+ QI+  I     DY++EKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+AT+AA            L+  S  V+
Sbjct:  219 ILLFDKKITNLKDLLPVLEQVQKSGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESATINDLGQASSVVIDKDNTTIVNGAGEKSAIDARITQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATRAAVEEGIVVGGGSALILASKSVN 426          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNFM2.320e-5553.8860 kDa chaperonin 1 OS=Syntrophobacter fumaroxidan... [more]
CH601_RHISN2.320e-5551.8060 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR23... [more]
CH601_AZOSB2.320e-5552.2560 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) ... [more]
CH60_THELT3.030e-5552.7060 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_SULNB3.030e-5553.6760 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-... [more]
CH60_OCHA43.030e-5554.0760 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]
CH60_DINSH3.030e-5550.4560 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]
CH60_CHLCH3.030e-5551.3560 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH60_CAMLR3.030e-5555.0760 kDa chaperonin OS=Campylobacter lari (strain RM... [more]
CH60_CAMC13.030e-5555.7760 kDa chaperonin OS=Campylobacter concisus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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