FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.168e-55
Identity = 114/222 (51.35%), Postives = 152/222 (68.47%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL +KK++  + ++ VLE  ++   P+LIIAED+E EALATLVVN+LRG LK++A+KAPGFG+R+   L+DIAILTGG +I +E+G+ L+ V  ++LG A KVV+ K+ TTIVG    +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RVEDALNAT+AA            LLR    V  I    DN + + G
Sbjct:  220 ILLHEKKVSGLQSMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVSAVKAPGFGDRRKAMLEDIAILTGGQLISEEIGIKLESVTLKMLGRAKKVVIDKENTTIVGGAGKKPDIEARVQQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRIHN--DNADVQAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.168e-55
Identity = 110/219 (50.23%), Postives = 157/219 (71.69%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +L+ DKKI++  DLI VLE   +   P++I+AE++E EALATLVVNK RG L++AA++AP FGER+   L DIA+LTGGT+I ++  ++L+KV    LG A +V +TKD+TTIV + +    +S R+A I+  ++  + +Y++EKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL LS  +  + + L+ D++
Sbjct:  218 ILITDKKISSIADLIPVLETVQKNGTPLIILAEEVEGEALATLVVNKNRGVLQVAAVRAPSFGERRKAALGDIAVLTGGTLISEDKAMSLEKVQISDLGQARRVTITKDSTTIVANDNQNTELSNRIASIKRELDETDSEYDQEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGIVAGGGTTLLELSEGLGDLAKKLEGDQK 436          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_CORJK (60 kDa chaperonin 1 OS=Corynebacterium jeikeium (strain K411) GN=groL1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.168e-55
Identity = 113/208 (54.33%), Postives = 147/208 (70.67%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVD 631
            +LLV  KI+N +DL+ +LE  ++   P+LI+AEDIE EAL+TLVVNK+RG  K  A+KAPGFG+R+   L DIAILTGG VI +EVGL+L+     +LG A KVV+TKD TTIV    + + ++ R+ QIR  IENA+ DY+ EKL ER+AKLSGGVAV+QVGA TE ELKE+K R+EDA+   KAA            LL+ +S +D
Sbjct:  223 ILLVSSKISNVKDLLPLLEKVMQSGKPLLIVAEDIEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAQLQDIAILTGGQVIAEEVGLSLETADLPMLGTARKVVVTKDDTTIVDGAGSAEQLAGRIKQIRQEIENADSDYDAEKLQERLAKLSGGVAVLQVGAATEVELKERKHRIEDAVRNAKAAAEEGIVAGGGAALLQTASVLD 430          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_XYLFM (60 kDa chaperonin OS=Xylella fastidiosa (strain M12) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +LL DKKI+N RDL+ VL+   + +  +LI+AE++E EALATLVVN +RG +K+ A+KAPGFG+R+   L+D+A+LTGGTVI +EVGL+L+K     LG A KV ++K+ TTI+      DA++ RV QI+T IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL AT+AA            L+R+ + +  +K
Sbjct:  220 ILLHDKKISNVRDLLTVLDAVAKESKQLLIVAEEVEGEALATLVVNNIRGIIKVCAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLSLEKATTSHLGKAKKVRVSKENTTIIDGMGDNDAINGRVKQIKTQIEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALLATRAAVEEGVIPGGGVALIRVITAISNLK 430          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_XYLFA (60 kDa chaperonin OS=Xylella fastidiosa GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +LL DKKI++ RDL+ VL+   + + P+LI+AE++E EALATLVVN +RG +K+ A+KAPGFG+R+   L+D+A+LTGGTVI +EVGL+L+K     LG A KV ++K+ TTI+      DA++ RV QI+T IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL AT+AA            L+R  + +  +K
Sbjct:  220 ILLHDKKISSVRDLLTVLDAVAKESKPLLIVAEEVEGEALATLVVNNIRGIIKVCAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLSLEKATTSHLGKAKKVRVSKENTTIIDGIGDNDAINGRVKQIKTQIEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALLATRAAVEEGVIPGGGVALIRAITAISNLK 430          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 114/217 (52.53%), Postives = 147/217 (67.74%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDND 658
            +L+ DKK++N +DL+ +LE  ++    +LIIA+D+E EALATLVVNKLRG     A+KAPGFG+R+ + L DIAILTGG VI +E+G  L  V  ++LG A +V +TK+ TTIVG       + KRV QI+  IE    DY+REKL ER+AKL+GGVAVIQ GA TETELKEKK R+EDAL ATKAA            LL +   V  + ++LD D
Sbjct:  218 ILITDKKLSNIQDLLPLLEQVVQHGKKLLIIADDVEGEALATLVVNKLRGTFTCVAVKAPGFGDRRKEMLQDIAILTGGQVISEELGYDLKDVRLDMLGRARQVKVTKENTTIVGGAGDAAEIKKRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQAGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLDGD 434          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 114/217 (52.53%), Postives = 147/217 (67.74%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDND 658
            +L+ DKK++N +DL+ +LE  ++    +LIIA+D+E EALATLVVNKLRG     A+KAPGFG+R+ + L DIAILTGG VI +E+G  L  V  ++LG A +V +TK+ TTIVG       + KRV QI+  IE    DY+REKL ER+AKL+GGVAVIQ GA TETELKEKK R+EDAL ATKAA            LL +   V  + ++LD D
Sbjct:  218 ILITDKKLSNIQDLLPLLEQVVQHGKKLLIIADDVEGEALATLVVNKLRGTFTCVAVKAPGFGDRRKEMLQDIAILTGGQVISEELGYDLKDVRLDMLGRARQVKVTKENTTIVGGAGDAAEIKKRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQAGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLDGD 434          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 111/218 (50.92%), Postives = 151/218 (69.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L+ ++KI+N +DL+ +L   ++   P+LIIAED+E EALATL+VNKLRG  +  A+KAPGFG+R+ + ++DIAILTGG VI +E+GL L+      LG A KVV+TKD TTIV      + +  R+ QI+  +E  + D++REKL ER+AKL+GGVAVI+VGA TETELKEKK RVEDAL+AT+AA            LL+    V  + + LD DE
Sbjct:  219 ILIANQKISNVQDLLPLLNQVMQANKPLLIIAEDVEGEALATLIVNKLRGTFQSCAVKAPGFGDRRKRMMEDIAILTGGEVITEELGLKLENTQLSQLGRARKVVVTKDDTTIVDGAGDPEQIKGRINQIKAELETTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKHRVEDALSATRAALEEGIVPGGGVALLKAQKAVGELLDELDGDE 436          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 114/208 (54.81%), Postives = 147/208 (70.67%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVD 631
            +LL DKKI+N RDL+ VLE   + + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+K   + LG A ++ + K+ TTI+        +  RVA+IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR  + ++
Sbjct:  220 VLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALE 427          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 114/208 (54.81%), Postives = 147/208 (70.67%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVD 631
            +LL DKKI+N RDL+ VLE   + + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+K   + LG A ++ + K+ TTI+        +  RVA+IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR  + ++
Sbjct:  220 VLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALE 427          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHOP25.168e-5551.3560 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_PROM15.168e-5550.2360 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_CORJK5.168e-5554.3360 kDa chaperonin 1 OS=Corynebacterium jeikeium (s... [more]
CH60_XYLFM6.750e-5552.1360 kDa chaperonin OS=Xylella fastidiosa (strain M1... [more]
CH60_XYLFA6.750e-5552.1360 kDa chaperonin OS=Xylella fastidiosa GN=groL PE... [more]
CH60_THEPX6.750e-5552.5360 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP36.750e-5552.5360 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH60_RUBXD6.750e-5550.9260 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH60_NEIMF6.750e-5554.8160 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA6.750e-5554.8160 kDa chaperonin OS=Neisseria meningitidis serogr... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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