FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 119/223 (53.36%), Postives = 153/223 (68.61%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N RDL+  LE   +   P+LIIAE++E EALATLVVN LRG LK+ A+KAPGFG+R+   L+DIA+LTGG VI +EVG++L+KV    LG A ++ + K+ T I+ DGS + A +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR       IK   DN ++  G
Sbjct:  220 VLLYDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIAVLTGGKVIAEEVGMSLEKVTLADLGQAKRIEVGKENTIII-DGSGEAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQTAGVIKG--DNADQDAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_COREF (60 kDa chaperonin 2 OS=Corynebacterium efficiens GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 115/222 (51.80%), Postives = 152/222 (68.47%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLV  KI+N +DL+ +LE  ++   P+LIIAED+E EAL+TLVVNK+RG  K  A+KAPGFG+R+   L DIAILTGG VI +EVGL+L+     +LG A KVV+TKD TTIV    +++ +  RV QIR  IEN++ DY+REKLNER+AKL+GGVAV++VGA TE ELKE+K R+EDA+   KAA            L++ +         LDND +  G
Sbjct:  223 ILLVSGKISNIKDLLPLLEKVMQSGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAQLQDIAILTGGQVISEEVGLSLETADLPLLGQARKVVVTKDDTTIVDGAGSEEQIEGRVNQIRAEIENSDSDYDREKLNERLAKLAGGVAVLKVGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALIQAA-------HVLDNDLDLTG 437          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_AZOSB (60 kDa chaperonin 2 OS=Azoarcus sp. (strain BH72) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 115/222 (51.80%), Postives = 152/222 (68.47%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N R+L+ VLE   +   P+L++AED++ EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVGL+L+K     LG A +V + K+ TT++    + +A+  RV+ I  LI  A  DY+REKL ER AKL+GGVAVI+VGA TE ELKEKK RVEDAL+AT+AA            LLR  + +  +K   DN E+  G
Sbjct:  220 ILLFDKKISNIRELLPVLEQVAKAGSPLLVVAEDVDGEALATLVVNTIRGILKVVAVKAPGFGDRRKAILEDIAILTGGQVIAEEVGLSLEKATLADLGQAKRVEVQKENTTLIDGAGSVEAIKARVSSIDALIAAATSDYDREKLQERKAKLAGGVAVIKVGAATEVELKEKKARVEDALHATRAAVEEGIVPGGGVALLRARAAIKDLKG--DNHEQDAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 113/222 (50.90%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKIT  +DL+ +LE   R   P++IIAEDIE+EALATLVVN+LRG L +AA+KAPGFG+R    L+DIA+LT G VI ++ GL L+    ++LG A ++ +TKD TTIV +G+ + AV  R  QIR  IE  +  Y++EKL ER+AKL+GGVAVI+VGA TETE+K++KLR+EDA+NATKAA           TL+ L+ ++          EE +G
Sbjct:  219 VLVTDKKITLVQDLVPILEQVARAGKPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRSKAMLEDIAVLTAGQVIAEDAGLKLENAKLDMLGKARRITITKDHTTIVAEGN-EKAVKARCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 116/209 (55.50%), Postives = 149/209 (71.29%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIR-GAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVD 631
            +LL DKKI+N +DL+ VLE  ++ G  P+LIIAEDIE EALATLVVNKLRG L + A+KAPGFG+R+   L DIAILTGG VI +EVG  L+    E LG A ++V+ K+ TTIVG    + AV  R+ +I+  IE    +Y++EKL ER+AKL+GGVAVI+VGA TETE+KEKK RV+DAL ATKAA            L+R ++KV+
Sbjct:  220 ILLYDKKISNMKDLLPVLEKVVQTGNKPLLIIAEDIEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLQDIAILTGGQVISEEVGRTLESATLEDLGQADRIVVDKENTTIVGGKGDKAAVEARIKEIKAQIEQTTSEYDKEKLQERLAKLAGGVAVIKVGAATETEMKEKKDRVDDALAATKAAVEEGIVIGGGTALVRAANKVN 428          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_NAUPA (60 kDa chaperonin OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 117/223 (52.47%), Postives = 154/223 (69.06%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIR-GAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N +DL+ +LE  ++ G  P+LIIAEDIE EALATLVVNKLRG L + A+KAPGFG+R+   L DIAILTGG VI +E+G  L+      LG A +VV+ K+ TTIV     + A+  R+AQI+  IE    DY+REKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+ATKAA            +L+ +  +      +++ +EK+G
Sbjct:  220 ILLYDKKISNMKDLLPLLEQMVQAGNKPLLIIAEDIEGEALATLVVNKLRGVLNVCAVKAPGFGDRRKAMLQDIAILTGGQVISEELGRTLESATLADLGQAGRVVVDKENTTIVDGRGDKAAIEARIAQIKKEIEETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAAILKAAKNISV---NVEDADEKIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_GEOSW (60 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/211 (52.61%), Postives = 148/211 (70.14%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +L+ DKKI+N +D++ +LE  ++   P+LIIAED+E EALATLVVNKLRG     A+KAPGFG+R+   L+DIAILTGG VI +E+G  L       LG ASKVV+TK+ TTIV      + +  R+ QIR  +E    +++REKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDALN+T+AA            L+ + +KV AI+
Sbjct:  218 ILITDKKISNIQDILPILEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFTAVAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRDLKSTTIASLGRASKVVVTKENTTIVDGAGDSERIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALMNVYNKVAAIE 428          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FRATN (60 kDa chaperonin OS=Francisella tularensis subsp. novicida (strain U112) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/222 (50.00%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+VDKKI+N RDL+ VLE   +    +LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA LTG T + +++ + L++   E LG AS+V +TKD TTI+     ++A++KR+  I+  I  A  DY+REKL ER+AKLSGGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G
Sbjct:  220 ILIVDKKISNIRDLLPVLEGVSKSGRALLIIAEDVESEALATLVVNNMRGVVKVCAVKAPGFGDRRKAMLEDIATLTGATFVSEDLSMKLEETNMEHLGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/222 (50.00%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKI+   +++ +LE  ++   P++IIAED+E EALATLVVNKLRG L+  A+KAPGFG+R+   L DIAILTGG  I +E G+ L+ V  ++LG A KV   KD TTI+G    +  +  R+AQI+  +E  + +++REKL ER+AKL+GGVAVI+VGA TE ELKEKK R+EDAL+ATKAA            L+R    +D IK  +DN++E++G
Sbjct:  220 ILITDKKISAVSEILPILERVVQTGKPLVIIAEDVEGEALATLVVNKLRGVLQSLAVKAPGFGDRRKAMLQDIAILTGGQFISEETGIKLENVTLDMLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALIRTIKALDDIK--VDNEDERIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 114/218 (52.29%), Postives = 150/218 (68.81%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L  +KKI+  +D++ VLE   +   P++IIAED++ EALATLVVNKLRGAL++ A+KAPGFGER+   L DIA+LTGG V+ +++G+ L+ +    LG A +VV+ K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R++  +D IK   D+DE
Sbjct:  220 ILCNEKKISTMKDMLPVLEQVAKMQRPLVIIAEDVDGEALATLVVNKLRGALQVVAIKAPGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA-DDDE 436          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_POLNA6.750e-5553.3660 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]
CH602_COREF6.750e-5551.8060 kDa chaperonin 2 OS=Corynebacterium efficiens G... [more]
CH602_AZOSB6.750e-5551.8060 kDa chaperonin 2 OS=Azoarcus sp. (strain BH72) ... [more]
CH601_THEVL6.750e-5550.9060 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH60_NITSB8.816e-5555.5060 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_NAUPA8.816e-5552.4760 kDa chaperonin OS=Nautilia profundicola (strain... [more]
CH60_GEOSW8.816e-5552.6160 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH60_FRATN8.816e-5550.0060 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_DICTD8.816e-5550.0060 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_DESVV8.816e-5552.2960 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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