FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 114/218 (52.29%), Postives = 150/218 (68.81%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L  +KKI+  +D++ VLE   +   P++IIAED++ EALATLVVNKLRGAL++ A+KAPGFGER+   L DIA+LTGG V+ +++G+ L+ +    LG A +VV+ K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R++  +D IK   D+DE
Sbjct:  220 ILCNEKKISTMKDMLPVLEQVAKMQRPLVIIAEDVDGEALATLVVNKLRGALQVVAIKAPGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA-DDDE 436          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKI+N ++L+ +LE   +   P+LIIAE+IE EALATLVVNKLRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG A  V + KD +TIV    T+D +  R+ +I+  +E A  DY++EKL ER+AKLSGGVAV+ +GA TE E+KEKK RVEDAL+AT+AA            L+R  + ++ ++  ++N+++K G
Sbjct:  220 ILIYDKKISNMKELLPILEKTAQSGRPLLIIAEEIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATIGYLGQAGSVTIDKDNSTIVEGKGTEDDIKARINEIKNQVEKATSDYDKEKLQERLAKLSGGVAVLNIGATTEVEMKEKKARVEDALHATRAAVQEGIVAGGGVALIRAVTGLENVQ--VENEDQKTG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_BARBA (60 kDa chaperonin OS=Bartonella bacilliformis GN=groL PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 116/222 (52.25%), Postives = 156/222 (70.27%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ +KK++N + L+ VLE   +   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIA+LT G VI ++VG+ L+ V  E+LG A KV ++K+TTTIV     +  ++ RV+QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DALNAT+AA            LLR ++K  +IK    + E  +G
Sbjct:  220 ILIHEKKLSNLQSLLPVLEAVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTPLLR-AAKALSIKGKNPDQEAGIG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 114/218 (52.29%), Postives = 147/218 (67.43%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +LL DKKI   ++++ VLE  ++    +LIIAEDIE EALATLV+NKLRG  +  A+KAPGFG+R+   LDDIA+LTG TVI DE+G  L     ++LG A  V + KD TTIV       A+  RV QI+  IE    D+++EKL ER+AKLSGGVAVIQVGA TETELKE+KLR+EDALNAT+A            +L+ +   V+A+ ET + DE
Sbjct:  218 ILLTDKKINTVQEILPVLEQIVQQGRKLLIIAEDIEGEALATLVLNKLRGTFECVAVKAPGFGDRRKAMLDDIAVLTGATVISDELGYDLKTATIDMLGTARTVKVDKDNTTIVEGAGDSSAIKDRVNQIKRQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAGVEEGMVAGGGASLVHVIPAVEALLETTEGDE 435          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH605_RHILO (60 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/215 (51.63%), Postives = 153/215 (71.16%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD 652
            +LL +KK++N + ++ +LE  ++ + P++II+ED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGG VI +++G+ L+ VG  +LG A KV ++K+ TTIV     +  +  RVAQI+  IE    DY++EKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DALNAT+AA            LLR S  ++A+    D
Sbjct:  220 ILLHEKKLSNLQAMLPILEAVVQTSKPLVIISEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLNMLGRAKKVSISKENTTIVDGAGKKAEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVGANSD 434          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/222 (50.00%), Postives = 157/222 (70.72%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ +KK++N + L+ VLE  ++   P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGT I +++G+ L+ V  ++LG A KVV+ K+ TTIV    ++  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR    +D ++   +N +++ G
Sbjct:  220 VLIHEKKLSNLQALLPVLESVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLDMLGRAKKVVVEKENTTIVDGAGSKTEIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDAMHATRAAVEEGVLPGGGVALLRAVKALDRVQ--TENPDQRHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/222 (50.00%), Postives = 155/222 (69.82%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ +KK++N ++L+ VLE  ++   P++I+AED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KVV+ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    ++ +K  ++N ++K G
Sbjct:  220 ILIHEKKLSNLQELLPVLEAVVQSGKPLVIVAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVVIEKENTTIVDGNGEKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAIKVLEGLK--VENTDQKTG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ +KK++  + ++ +LE  ++   P+L+IAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGT I +++G+ L+ V   +LG A KVV+ K+ TTIV     +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR    +DA+K   DN ++K G
Sbjct:  220 VLIHEKKLSGLQAMVPLLESVVQSGKPLLVIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLNMLGRAKKVVIDKENTTIVDGAGRKKDIEARVTQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRALKALDAVKP--DNPDQKAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 112/222 (50.45%), Postives = 153/222 (68.92%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ +KK++N + LI +LE  ++   P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L+D+AILT G V+ +E+G  L+ V   +LG A KV++ KD TTIV     +  +  RV+QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DAL+AT+AA            LLR    +D +K    ND+++ G
Sbjct:  220 ILIHEKKLSNLQALIPLLEQVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDVAILTAGNVVSEELGTKLENVTIGMLGRAKKVIIDKDNTTIVDGAGNKADIDARVSQIRAQIETTTSDYDREKLQERVAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKSLDGLKAA--NDDQQSG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_BURXL (60 kDa chaperonin 1 OS=Burkholderia xenovorans (strain LB400) GN=groL1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 111/211 (52.61%), Postives = 144/211 (68.25%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +LL DKK++N RDL+ +LE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV Q+RT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + +  +K
Sbjct:  220 VLLHDKKVSNIRDLLPILEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVAKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGLK 430          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESVH8.816e-5552.2960 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_CHLT38.816e-5549.5560 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH60_BARBA8.816e-5552.2560 kDa chaperonin OS=Bartonella bacilliformis GN=g... [more]
CH60_ALKOO8.816e-5552.2960 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH605_RHILO8.816e-5551.6360 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=... [more]
CH602_RHISN8.816e-5550.0060 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH602_AZOC58.816e-5550.0060 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_NITWN8.816e-5549.5560 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH601_ERYLH8.816e-5550.4560 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH601_BURXL8.816e-5552.6160 kDa chaperonin 1 OS=Burkholderia xenovorans (st... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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