FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_STRAP (60 kDa chaperonin OS=Streptococcus anginosus GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 111/218 (50.92%), Postives = 156/218 (71.56%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L+ DKKI+N ++++ +LE+ ++ + P+LIIA+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI +++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  D++REKL ER+AKLSGGVAVI+VGA TETELKE KLR+EDALNAT+AA             + + S V+A+   L  DE
Sbjct:  218 ILITDKKISNIQEILPLLENILKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGDAEAIANRVAVIKSQIESSTSDFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNATRAAVEEGIVSGGGTAFVNVLSAVEAL--DLSGDE 433          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSYA2 (60 kDa chaperonin OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 112/222 (50.45%), Postives = 153/222 (68.92%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+++ +LE  ++ + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIA LTGGTVI +E+GL+L+    E LG A KV + K+ T IV        +  RV  IR  +E +  DY++EKL ER+AKL+GGVAVI+VGA TETE+KEKK RV+DAL+AT+AA            L+R  + +  ++   DND++  G
Sbjct:  219 ILLVDKKISNIREIVPLLEQVMQQSKPLLIIAEDVENEALATLVVNNMRGGLKTCAVKAPGFGDRRKAMLEDIATLTGGTVISEEIGLSLETATLEQLGTAKKVTVGKENTVIVDGAGHSADIENRVESIRRQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATETEMKEKKDRVDDALHATRAAVEEGVVPGGGVALVRAMNALSELRG--DNDDQNAG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 111/218 (50.92%), Postives = 152/218 (69.72%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L+ DKKI N ++++ VLE  ++   P+L+IAED+E EALATLVVNKLRG     A+KAPGFG+R+   L+DIA+LTG  VI +++GL L     + LG ASKVV+TK+ TT+V      +A+S RVAQIR   E +  D+++EKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDALN+T+A             L+ +  +V  +  TL+ DE
Sbjct:  218 ILITDKKIGNIQEVLPVLEQVVQQGKPLLMIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAVLTGAEVITEDLGLDLKSASIDQLGRASKVVVTKENTTVVEGSGDPEAISSRVAQIRAQAEESTSDFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAGVEEGMVPGGGTALVNIHRQVSEL--TLEGDE 433          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FRATO (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+VDKKI+N RDL+ +LE   +    +LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA LTG T + +++ + L++   E LG AS+V +TKD TTI+     ++A++KR+  I+  I  A  DY+REKL ER+AKLSGGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G
Sbjct:  220 ILIVDKKISNIRDLLPILEGVSKSGRALLIIAEDVESEALATLVVNNMRGVVKVCAVKAPGFGDRRKAMLEDIATLTGATFVSEDLSMKLEETNMEHLGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FRATM (60 kDa chaperonin OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+VDKKI+N RDL+ +LE   +    +LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA LTG T + +++ + L++   E LG AS+V +TKD TTI+     ++A++KR+  I+  I  A  DY+REKL ER+AKLSGGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G
Sbjct:  220 ILIVDKKISNIRDLLPILEGVSKSGRALLIIAEDVESEALATLVVNNMRGVVKVCAVKAPGFGDRRKAMLEDIATLTGATFVSEDLSMKLEETNMEHLGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FRATH (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain LVS) GN=groL PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+VDKKI+N RDL+ +LE   +    +LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA LTG T + +++ + L++   E LG AS+V +TKD TTI+     ++A++KR+  I+  I  A  DY+REKL ER+AKLSGGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G
Sbjct:  220 ILIVDKKISNIRDLLPILEGVSKSGRALLIIAEDVESEALATLVVNNMRGVVKVCAVKAPGFGDRRKAMLEDIATLTGATFVSEDLSMKLEETNMEHLGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FRATF (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+VDKKI+N RDL+ +LE   +    +LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA LTG T + +++ + L++   E LG AS+V +TKD TTI+     ++A++KR+  I+  I  A  DY+REKL ER+AKLSGGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G
Sbjct:  220 ILIVDKKISNIRDLLPILEGVSKSGRALLIIAEDVESEALATLVVNNMRGVVKVCAVKAPGFGDRRKAMLEDIATLTGATFVSEDLSMKLEETNMEHLGTASRVQVTKDNTTIIDGAGEKEAIAKRINVIKANIAEANSDYDREKLQERLAKLSGGVAVIKVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNHG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 115/222 (51.80%), Postives = 153/222 (68.92%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKK+++ ++L+ VLE   +   P+LIIAED++ EAL+TLVVNKLRGALKIAA+KAPGFG+R+   L+DIAILTGGTVI +E G  L+    E+LG A +V + KD TTIV      D +  RV QI+  +E +  DY++EKL ER+AKL+GGVAV+ VGA +E E+KEKK RV+DAL+AT+AA            LLR  + +  IK   DN +E  G
Sbjct:  220 ILLYDKKVSSLKELLPVLEPVAQSGKPLLIIAEDVDGEALSTLVVNKLRGALKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEERGFTLENTTIEMLGTAKRVTIDKDNTTIVSGAGEADMIKNRVNQIKGQMEASTSDYDKEKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALLRAKNVLKDIK--ADNADEATG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_ENTFA (60 kDa chaperonin OS=Enterococcus faecalis GN=groL PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +L+ DKKI+N +D++ +LE  ++ + P+LIIA+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI D++GL L     E LGNASKVV+ KD TTIV    +++A+  RV  I+  I     D++REKL ER+AKL+GGVAV++VGA TETELKE KLR+EDALNAT+AA            L+ +  KV A++
Sbjct:  218 ILITDKKISNIQDILPLLEQILQQSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITDDLGLELKDTTIENLGNASKVVVDKDNTTIVEGAGSKEAIDARVHLIKNQIGETTSDFDREKLQERLAKLAGGVAVVKVGAATETELKELKLRIEDALNATRAAVEEGMVSGGGTALVNVIGKVAALE 428          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 114/222 (51.35%), Postives = 152/222 (68.47%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ +KK++N ++L+ +LE   +   P+LIIAEDIE EALATLVVNKLRG L +AA+KAPGFG+R+   L+DIA LTGG V+ ++VG+ L+ +    LG+A ++ + KD TTIV     +  +  RV QIR  IE+   DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R    +DA+ +     EEK+G
Sbjct:  220 ILINEKKLSNMKELLPILEQTAKAGRPLLIIAEDIEGEALATLVVNKLRGTLNVAAVKAPGFGDRRKAMLEDIATLTGGQVVSEDVGINLEGITLGDLGHAKRITIDKDNTTIVDGAGKKADIEGRVKQIRAQIEDTTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALNATRAAVEEGVLPGGGVALVRC---LDALSKIKIKSEEKLG 438          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STRAP1.151e-5450.9260 kDa chaperonin OS=Streptococcus anginosus GN=gr... [more]
CH60_PSYA21.151e-5450.4560 kDa chaperonin OS=Psychrobacter arcticus (strai... [more]
CH60_OCEIH1.151e-5450.9260 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_FRATO1.151e-5449.5560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATM1.151e-5449.5560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATH1.151e-5449.5560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATF1.151e-5449.5560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FLAPJ1.151e-5451.8060 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_ENTFA1.151e-5452.1360 kDa chaperonin OS=Enterococcus faecalis GN=groL... [more]
CH60_DESOH1.151e-5451.3560 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
back to top