FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_STRMK (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain K279a) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 111/211 (52.61%), Postives = 152/211 (72.04%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +LL DKKI+N RDL+ VLE   +   P+LI+AE++E EALATLVVN +RG +K+ A+KAPGFG+R+   L+D+A+LTGGTVI +EVGL+L+K   + LG A KV ++K+ TTI+     +  V  RVAQI+T I++   DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R  + +  +K
Sbjct:  220 ILLHDKKISNVRDLLPVLEGVAKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVVAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLSLEKATIKDLGRAKKVQVSKENTTIIDGVGDKANVDARVAQIKTQIQDTSSDYDREKLQERVAKLAGGVAVIKVGASTEIEMKEKKDRVDDALHATRAAVEEGVVPGGGVALVRAITALAGLK 430          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_RHOS5 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 112/222 (50.45%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL +KK+++ + ++ +LE  I+   P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV + KD TTIV     +  +  RV+QIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G
Sbjct:  220 ILLHEKKLSSLQPMVPLLESVIQAQRPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAGKVLDGL--TGENPDQNAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_RHOPA (60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 112/222 (50.45%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL +KK+++ + ++ +LE  I+   P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV + KD TTIV     +  +  RV+QIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G
Sbjct:  220 ILLHEKKLSSLQPMVPLLESVIQAQRPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAGKVLDGL--TGENPDQNAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_PSYCK (60 kDa chaperonin OS=Psychrobacter cryohalolentis (strain K5) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 111/222 (50.00%), Postives = 153/222 (68.92%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LLVDKKI+N R+++ +LE  ++ + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIA LTGGTVI +E+GL+L+    E LG A KV + K+ T IV        +  RV  I+  +E +  DY++EKL ER+AKL+GGVAVI+VGA TETE+KEKK RV+DAL+AT+AA            L+R  + +  ++   DND++  G
Sbjct:  219 ILLVDKKISNIREIVPLLEQVMQQSKPLLIIAEDVENEALATLVVNNMRGGLKTCAVKAPGFGDRRKAMLEDIATLTGGTVISEEIGLSLETATLEQLGTAKKVTVGKENTVIVDGAGNSADIENRVESIKRQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATETEMKEKKDRVDDALHATRAAVEEGVVPGGGVALVRAMNALSELRG--DNDDQNAG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 112/218 (51.38%), Postives = 150/218 (68.81%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L+ DKKI+N ++++ +LE   +   P+LIIAED+E EALATLVVNK+RG     A+KAPGFG+R+   L+DIAILTGG VI +++GL L+     +LG A KV +TK+ TTIV        +  R+ QIRT IEN + D++REKL ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TL+     +D +   L+ DE
Sbjct:  219 ILITDKKISNIQEILPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKIRGTFNCVAVKAPGFGDRRKAMLEDIAILTGGQVITEDLGLKLENADISMLGRAHKVTVTKEDTTIVEGAGDSKEIQNRIKQIRTQIENTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGLVAGGGTTLIDAIPALDEL--NLEGDE 434          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 114/223 (51.12%), Postives = 161/223 (72.20%), Query Frame = 2
Query:    8 LLLVDKKITNAR-DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKIT  + DL+ VLE   +   P+LIIAEDIE+EALATL+VNKLRG L + A+KAPGFG+R+   L+DIAILTGG +I ++ GL+LDKV   +LG A+KV++ K++TTI+ + + ++ V  R  QIR  IE  +  YE+EKL ER+AKL+GG+AVI+VGA TETE+K+KKLR+EDA+NATKAA           TL+ L++ +    + +  ++E +G
Sbjct:  219 VLITDKKITLVQQDLLPVLEQIAKTNKPLLIIAEDIEKEALATLIVNKLRGILNVVAVKAPGFGDRRKSILEDIAILTGGQLITEDAGLSLDKVDLSMLGQANKVIVNKESTTIISN-ANENNVKARCEQIRKQIEITDSSYEKEKLQERLAKLAGGIAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIG 440          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_FLAJ1 (60 kDa chaperonin OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 115/222 (51.80%), Postives = 152/222 (68.47%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKK+++ ++L+ VLE   +   P+LIIAED++ EAL+TLVVNKLRGALKIAA+KAPGFG+R+   L+DIAILTGGTVI +E G  L+    E+LGNA +V + KD TTIV      D +  RV QI+  +E    DY++EKL ER+AKL+GGVAV+ VGA +E E+KEKK RV+DAL+AT+AA            LLR    +  +K   DN +E  G
Sbjct:  220 ILLYDKKVSSLKELLPVLEPVAQSGKPLLIIAEDVDGEALSTLVVNKLRGALKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEERGYTLENTTIEMLGNAKRVSIDKDNTTIVSGAGEADIIKNRVNQIKGQMETTTSDYDKEKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALLRAKLALADLK--ADNADEATG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ D+KI+   +++ +LE  ++   P++IIAED+E EALATLVVNKLRG L+  A+KAPGFG+R+   L DIAILTGG  I +E G+ L+ V  ++LG A KV   KD TTI+G    +  +  R+AQI+  +E  + +++REKL ER+AKL+GGVAVI+VGA TE ELKEKK R+EDAL+ATKAA            LLR    +D +K  +DN++E++G
Sbjct:  220 ILITDRKISAVSEILPILERVVQTGKPLVIIAEDVEGEALATLVVNKLRGVLQSLAVKAPGFGDRRKAMLQDIAILTGGQFISEETGIKLENVTLDMLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALLRTIKALDDVK--VDNEDERIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DIAST (60 kDa chaperonin OS=Diaphorobacter sp. (strain TPSY) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 116/222 (52.25%), Postives = 149/222 (67.12%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N RDL+  LE   + + P+LIIAE+++ EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVGL L+KV    LG A ++ + K+ TTI+        +  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR    V  +  +  N E+  G
Sbjct:  220 VLLFDKKISNIRDLLPTLEQVAKASRPLLIIAEEVDGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTTIIDGAGAAADIEARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQAVGNL--STGNPEQDAG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_DESRM (60 kDa chaperonin OS=Desulfotomaculum reducens (strain MI-1) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 108/212 (50.94%), Postives = 152/212 (71.70%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIR-GAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +L+ DKK+++ ++L+ VLE  ++ G  P+L+I ED+E EALATLV+NKLRG L + A+KAPGFG+R+   L+DIAILTGGTVI +EVGL LDK   ++LG A ++ + K+ T IVG    Q  +  R+AQI+  IE    D++REKL ER+AKL+GGVAVIQVGA TE E+KEKKLR++DALNAT+AA             + + + +D+++
Sbjct:  218 ILITDKKVSSVQELLPVLEKVVQTGNKPVLLICEDLEGEALATLVLNKLRGTLNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEEVGLKLDKAELDMLGTARQIRVKKEETIIVGGAGEQAQIEGRIAQIKKQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATEVEMKEKKLRIDDALNATRAAVEEGIVPGGGSAFVNIITTLDSVQ 429          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STRMK1.504e-5452.6160 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_RHOS51.504e-5450.4560 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_RHOPA1.504e-5450.4560 kDa chaperonin OS=Rhodopseudomonas palustris GN... [more]
CH60_PSYCK1.504e-5450.0060 kDa chaperonin OS=Psychrobacter cryohalolentis ... [more]
CH60_HALOH1.504e-5451.3860 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_GALSU1.504e-5451.1260 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_FLAJ11.504e-5451.8060 kDa chaperonin OS=Flavobacterium johnsoniae (st... [more]
CH60_DICT61.504e-5449.5560 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_DIAST1.504e-5452.2560 kDa chaperonin OS=Diaphorobacter sp. (strain TP... [more]
CH60_DESRM1.504e-5450.9460 kDa chaperonin OS=Desulfotomaculum reducens (st... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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