FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:957..1630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_CHRVI (60 kDa chaperonin OS=Chromatium vinosum GN=groL PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 116/222 (52.25%), Postives = 150/222 (67.57%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL DKKI+N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVGL+L+K     LG A +V + KD TTI+    ++  +  R  QIR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + V  +K    N ++ VG
Sbjct:  220 ILLYDKKISNIRDLLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGLSLEKATLTDLGTAKRVQVGKDETTIIDGSGSEIDIKARCEQIRAQVEETSSDYDREKLQERLAKLAGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALVRAIAAVKDLKGA--NHDQDVG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 113/210 (53.81%), Postives = 144/210 (68.57%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAI 637
            +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + + A+
Sbjct:  220 VLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAAL 429          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 108/222 (48.65%), Postives = 153/222 (68.92%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +L+ DKKI+N +D + +LE A++   P+L+IAED++ EAL TLVVN+LR  LKI A+KAPGFG+R+   L+DIA+LTGG VI +E GL L++   E+LG   KV ++KD TTIV     ++ + +R+ QI+  I+N   DY++EKL ER+AKLSGGVAV+ VGA +E E+KEKK RV+DAL AT+AA             +R S  ++ +K   DN++E  G
Sbjct:  220 ILIYDKKISNLKDFLPILEPAVQSGRPLLVIAEDVDSEALTTLVVNRLRSQLKICAVKAPGFGDRRKAMLEDIAVLTGGIVISEEKGLKLEQATLEMLGTCDKVTVSKDNTTIVNGAGAKENIQERINQIKAEIKNTTSDYDKEKLQERLAKLSGGVAVLYVGAASEVEMKEKKDRVDDALCATRAAIEEGIVPGGGVAYIRASEALEGLKG--DNEDETTG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_BACAN (60 kDa chaperonin OS=Bacillus anthracis GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 113/211 (53.55%), Postives = 152/211 (72.04%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAI 637
            +L+ DKKI+N ++++ VLE  ++   P+LIIAED+E EALATLVVNKLRG   + A+KAPGFG+R+   L+DIAILTGG VI +E+G  L     E LG A KVV+TK+ TT+V G GST+  +  R+ QIR  +E    +++REKL ER+AKL GGVAVI+VGA TETELKE+KLR+EDALN+T+AA           +L+ + +KV +I
Sbjct:  218 ILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQ-IEARIGQIRAQLEETTSEFDREKLQERLAKLVGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI 427          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_BACAC (60 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 113/211 (53.55%), Postives = 152/211 (72.04%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAI 637
            +L+ DKKI+N ++++ VLE  ++   P+LIIAED+E EALATLVVNKLRG   + A+KAPGFG+R+   L+DIAILTGG VI +E+G  L     E LG A KVV+TK+ TT+V G GST+  +  R+ QIR  +E    +++REKL ER+AKL GGVAVI+VGA TETELKE+KLR+EDALN+T+AA           +L+ + +KV +I
Sbjct:  218 ILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQ-IEARIGQIRAQLEETTSEFDREKLQERLAKLVGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI 427          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_BACAA (60 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 113/211 (53.55%), Postives = 152/211 (72.04%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAI 637
            +L+ DKKI+N ++++ VLE  ++   P+LIIAED+E EALATLVVNKLRG   + A+KAPGFG+R+   L+DIAILTGG VI +E+G  L     E LG A KVV+TK+ TT+V G GST+  +  R+ QIR  +E    +++REKL ER+AKL GGVAVI+VGA TETELKE+KLR+EDALN+T+AA           +L+ + +KV +I
Sbjct:  218 ILITDKKISNIQEILPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGEVITEELGRDLKSATVESLGRAGKVVVTKENTTVVEGVGSTEQ-IEARIGQIRAQLEETTSEFDREKLQERLAKLVGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI 427          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 111/218 (50.92%), Postives = 150/218 (68.81%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 661
            +L+ +KKI N +D + +LE   +   P L+IAEDIE EALATLVVN+LRG L I A+KAPGFG+R+   ++DIAILTGG  I +++G+ L+ VG E LG A +VV++KD T IV   +    +  R++QIR  I++   DY+REKL ER+AKL+GGVAVI VGA TETE+KEKK RV+DAL+AT+AA            L+R    +D +K  L+ DE
Sbjct:  219 ILIHEKKINNLKDFLPLLEKVAKSGRPFLVIAEDIEGEALATLVVNRLRGVLNICAVKAPGFGDRRKAMMEDIAILTGGKCITEDLGIKLENVGIEDLGQAKRVVVSKDETVIVEGSAKSSDIEARISQIRRQIKDTTSDYDREKLQERLAKLAGGVAVIHVGAATETEMKEKKARVDDALHATRAAVEEGIVPGGGVALIRAQKAIDTLK--LEGDE 434          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_SYNFM (60 kDa chaperonin 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 108/202 (53.47%), Postives = 144/202 (71.29%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLR 613
            +L+ +KKI+N +DL+ VLE   +   P+LI+AED+E EALATLVVNKLRG LK++A+KAPGFG+R+   L+D+A+LTGG V+ +++G+ L+ V  + LG A  V + KD TTIV     + A+  RV QIR  I+    DY+REKL ER+AK+ GGVAV++VGA TETE+KEKK RVEDALNAT+AA            LLR
Sbjct:  220 ILINEKKISNMKDLLPVLEQIAKMGAPLLIVAEDVEGEALATLVVNKLRGTLKVSAVKAPGFGDRRKAMLEDLAVLTGGKVVSEDIGVKLENVSLQDLGRAKTVRIDKDNTTIVDGAGARSAIEARVKQIRAQIDETTSDYDREKLQERLAKIVGGVAVVRVGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVALLR 421          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 114/219 (52.05%), Postives = 151/219 (68.95%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEE 664
            +L+ +KKI+  +DL+ +LE   +   P+LIIAEDIE EALATLVVNK+RG L +AA+KAPGFG+R+   L+DIAILTGGTVI +++G  L+    E LG A ++ + KD TTI+     + A+  RV QIR  I+    DY+REKL ER+AKL GGVAVI+VGA TETE+KEKK RVEDALNAT+AA             +R    ++A+K  L+ DE+
Sbjct:  220 ILIYEKKISGMKDLLPILEQIAKMGRPLLIIAEDIEGEALATLVVNKIRGTLHVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDMGYKLENTRLEDLGRAKRIQIDKDNTTIIDGAGERAALEGRVKQIRAQIDETTSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVAYIRTLPILEALK--LEGDEQ 436          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_ROSDO (60 kDa chaperonin 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.504e-54
Identity = 109/211 (51.66%), Postives = 151/211 (71.56%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 640
            +L+ +KK+++ + L+ +LE  I+   P+L+IAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV +TKD TT+V     +  +  RV+QIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++ +  +D ++
Sbjct:  220 ILIHEKKLSSLQPLVPLLESIIQAGKPLLVIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGTAKKVAITKDETTVVNGAGEKAEIDARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKALDGLQ 430          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CHRVI1.504e-5452.2560 kDa chaperonin OS=Chromatium vinosum GN=groL PE... [more]
CH60_BURTH1.504e-5453.8160 kDa chaperonin OS=Burkholderia thailandensis GN... [more]
CH60_BACV81.504e-5448.6560 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH60_BACAN1.504e-5453.5560 kDa chaperonin OS=Bacillus anthracis GN=groL PE... [more]
CH60_BACAC1.504e-5453.5560 kDa chaperonin OS=Bacillus anthracis (strain CD... [more]
CH60_BACAA1.504e-5453.5560 kDa chaperonin OS=Bacillus anthracis (strain A0... [more]
CH60_AKKM81.504e-5450.9260 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH602_SYNFM1.504e-5453.4760 kDa chaperonin 2 OS=Syntrophobacter fumaroxidan... [more]
CH602_SYNAS1.504e-5452.0560 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH601_ROSDO1.504e-5451.6660 kDa chaperonin 1 OS=Roseobacter denitrificans (... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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