FC930555

Overview
NameFC930555
Unique NameFC930555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.231e-31
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  118 LVLCVLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            LV+C++V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C+ V+
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.231e-31
Identity = 67/117 (57.26%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   91 MAALKLVSALVL-CVLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            MA L  ++ LVL C++V GP+++ A ++CG V+G +APCI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1
Query:   91 MAALKLVSALVL-CVLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            MA L  +S LVL C++V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.805e-31
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query:   91 MAALKLVSALVL-CVLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            MA L  +S LVL C++V GP++  A ++CG V+G+LA CI YL   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.805e-31
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 1
Query:  163 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            ITCGQV+ SLAPCI YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  163 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            ITCGQV+ +LAPCI Y++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:   91 MAALKLVSALVL-CVLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            MA L  +S LVL C++V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.477e-31
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   94 AALKLVSALVLCVLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 432
            A +KL  A++LC++V  P +   ITCG V+  LAPCI YL+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   A GLP  CGV IPY IS ST+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.477e-31
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  103 KLVSALVLCVLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            K+   +VLC++V  P  A+AITCGQVT +LAPC+ YLR+ GP+   CC GV++L  +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of FC930555 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   97 ALKLVSALVLCVLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 435
            ++KL   +++  ++  P++  AI+CG VTG L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:    4 SMKLACVVLVMCMIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
The following BLAST results are available for this feature:
BLAST of FC930555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_LENCU2.231e-3160.75Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP2_BRANA2.231e-3157.26Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPB_BRAOT2.914e-3158.12Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP3_BRANA3.805e-3155.56Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
LTP1_MORNI3.805e-3170.33Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDO6.491e-3162.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_BRANA6.491e-3157.26Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_SPIOL8.477e-3155.75Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_TOBAC8.477e-3159.46Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP5_LENCU1.107e-3055.26Non-specific lipid-transfer protein 5 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionC34008G09EF PostHarvC1 Citrus clementina cDNA clone C34008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930555 ID=FC930555; Name=FC930555; organism=Citrus clementina; type=EST; length=659bp
GACTCAACTCAAGCTTCTGAACACAGCTAGCCATAAACAAAGGCAAAAAA
AAAAAGAAAAAGAAAAAGAAAATCTCAGGAGAAATCTCAAATGGCTGCCC
TCAAGCTTGTTTCAGCTTTGGTTCTGTGCGTGTTGGTGACTGGTCCCCTG
AGTGCTCAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCACCATG
CATCGTTTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGCAACG
GCGTCAGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACT
GCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCAACCC
TAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCTTACA
AGATCAGCATCTCCACTGACTGCTCTAAGGTCCGGTGAACAGGAATCTGG
GCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAAATGTATAATAA
TAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTACACTTTGTACT
GCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTATTGTCTTTGCT
TTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAAATGAAATCTT
GCCTTGTGT
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