FC930566

Overview
NameFC930566
Unique NameFC930566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15109 contig Ccv1_Contig15109:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930566 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.172e-41
Identity = 90/215 (41.86%), Postives = 135/215 (62.79%), Query Frame = 1 
Query:   85 SKSKILFIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVGPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLKQILYIK 723
            +K++ L +GGTG+IG+FI +AS+  G+PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   V P  + +  K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDGN KA +   +DIG +T+K +DD RTL + ++ +
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFR 224
The following BLAST results are available for this feature:
BLAST of FC930566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN2.172e-4141.86Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC34008H08EF PostHarvC1 Citrus clementina cDNA clone C34008H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930566 ID=FC930566; Name=FC930566; organism=Citrus clementina; type=EST; length=723bp
GCCATCCATTTGATCATTTCAAACAAAACAGGAAAAAAAGGAAAGAATCC
CCGAAATTGAACTGAACAAGTCTCGGTAATGGCGTCGAAAAGCAAGATTC
TATTCATCGGTGGGACAGGGTACATCGGCAAATTCATCGTCGAAGCGAGC
GTGAAAGCCGGCCACCCGACGTTCGTGCTCGTGAGAGAATCCACACTCTC
CGCTCCTTCCAAATCTCAGCTCCTCGATCACTTCAAAAAACTCGGCGTCA
ATCTCGTCATCGGAGATGTGTTGAATCACGAGAGCTTGGTGAAGGCGATA
AAACAAGTGGACGTGGTGATATCAACGGTCGGTCACACTTTATTAGGTGA
TCAGGTCAAGATTATTGCGGCCATTAAAGAAGCTGGTAACATTAAGAGAT
TCTTCCCTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGCCGTTGGG
CCAGCAAAATCAGCATTTGCCACAAAGGCGAAAATCCGCCGAGCCGTTGA
GGCTGAAGGGATTCCGTATACTTATGTAGCGTCGAATTTCTTTGCTGCTT
ACTTCCTTCCCAATTTGTCGCAGCCCGGGGCCACTGCCCCACCTAGGGAT
AAAGTTGTCATCTTAGGCGATGGAAATCCTAAAGCTGTTTATAACAAGGA
AGATGATATTGGAACCTATACTATCAAAGCGGTTGATGATCCCAGAACCT
TGAAACAAATCCTTTACATTAAA
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