FC930569

Overview
NameFC930569
Unique NameFC930569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACHK (Ornithine carbamoyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=argF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIHLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_AGRT5 (Ornithine carbamoyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=argF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 76/162 (46.91%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  194 AEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            A    FL +S      +  ILD A   K   K+G     P  GK ++MIF KPS RTRVSF+ G   LGG  ++L   ++Q+G+ E   D A+VL RY D IM R   H  +L+LA++ATVPVINGLTD  HPCQIMAD +T  EH G ++G  + + GDGN
Sbjct:    2 ASPKHFLDLSAVGPQDLRTILDDARARKVATKAGTAE-KPLAGKMLAMIFEKPSTRTRVSFDVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAIMIRTTDHSRLLELAEHATVPVINGLTDDTHPCQIMADIMTFEEHRGPVKGKTIAWTGDGN 162          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_SILPO (Ornithine carbamoyltransferase OS=Silicibacter pomeroyi GN=argF PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33
Identity = 76/165 (46.06%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALL----KSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*CT 691
            FL I   D A +  ++D+A  +K       K+      P K + +++IF KPS RTRVSF+ G   +GG  + L  +D+Q+G  E   D ARVL RY D+IM R F    + ++A+YA VPVINGLTD +HPCQIMAD LT  EH G + G KVV+ GDGN  C+
Sbjct:    4 FLDIHKTDAADLRAMIDQAGAMKQARLGRPKAAPDDEQPLKDRMVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGNDMQLGHGETIADTARVLSRYVDMIMIRTFDESVLAEMAEYADVPVINGLTDRSHPCQIMADVLTYEEHRGPIAGKKVVWTGDGNNVCS 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_RHOPA (Ornithine carbamoyltransferase OS=Rhodopseudomonas palustris GN=argF PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            FL +++   + +  +L  A  +KA  K+      P  GKT++MIF KPS RTRVSF+ G   LGG +I L   ++Q+G+ E   D ARVL R+ DIIM R+  H+ +L+LA  ATVPVINGLT  +HPCQ+MAD +T  EH G ++G  + + GD N
Sbjct:   10 FLDLTELPTSELRNMLSAAVAMKAKRKANADGEKPLAGKTLAMIFDKPSTRTRVSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRFVDIIMIRILNHEALLELAANATVPVINGLTRKSHPCQVMADVMTFEEHRGPIKGRTIAWTGDDN 166          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_RHOSK (Ornithine carbamoyltransferase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=arcB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFL----PFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            FL I   D A + +++D A  +KA  K   +       P  G+ +++IF KPS RTRVSF+ G   +GG  + L   ++Q+G  E   D ARVL RY D+IM R F    +L++A++ATVPVINGLT+  HPCQIMAD +T  EH G + G KVV+ GDGN  C
Sbjct:    4 FLDIHKTDTAELRQMMDSAHAMKAARKGRPKGQFDEDQPLAGRMVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGKEMQLGHGETIADTARVLSRYVDLIMIRTFEEATLLEMAEHATVPVINGLTNRTHPCQIMADVMTYEEHRGPIAGRKVVWAGDGNNVC 167          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_METLZ (Ornithine carbamoyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=argF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 75/161 (46.58%), Postives = 100/161 (62.11%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            DFL I+D        IL  AA +K    +G    L   GKT++MIF K S RTR+SF+ G   LGG+A+YL   D Q+G+ E   D ARV+ RY    + R + H+ I + AKYA++PVIN L+D  HPCQIMAD+LT+ E  G L+G K+ ++GDGN  C
Sbjct:    4 DFLSITDLSAEEYEDILTLAARLKRQRYAGVPHPL-LAGKTLAMIFEKASTRTRMSFDVGMYDLGGYALYLNAKDTQLGRGETVADTARVMSRYVHGAIMRTYKHETITEFAKYASIPVINALSDKEHPCQIMADSLTLKEKFGELDGLKIAWIGDGNNVC 163          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACCR (Ornithine carbamoyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=argF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACCQ (Ornithine carbamoyltransferase OS=Bacillus cereus (strain Q1) GN=arcB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACC7 (Ornithine carbamoyltransferase OS=Bacillus cereus (strain AH187) GN=arcB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BRUME (Ornithine carbamoyltransferase OS=Brucella melitensis GN=argF PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF K S RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA+YATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGN
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGN 165          
The following BLAST results are available for this feature:
BLAST of FC930569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 498
Match NameE-valueIdentityDescription
OTC_BACHK1.654e-3344.31Ornithine carbamoyltransferase OS=Bacillus thuring... [more]
OTC_AGRT51.654e-3346.91Ornithine carbamoyltransferase OS=Agrobacterium tu... [more]
OTC_SILPO2.160e-3346.06Ornithine carbamoyltransferase OS=Silicibacter pom... [more]
OTC_RHOPA2.160e-3345.86Ornithine carbamoyltransferase OS=Rhodopseudomonas... [more]
OTC_RHOSK2.821e-3345.73Ornithine carbamoyltransferase OS=Rhodobacter spha... [more]
OTC_METLZ2.821e-3346.58Ornithine carbamoyltransferase OS=Methanocorpuscul... [more]
OTC_BACCR2.821e-3344.31Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
OTC_BACCQ2.821e-3344.31Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
OTC_BACC72.821e-3344.31Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
OTC_BRUME3.685e-3348.41Ornithine carbamoyltransferase OS=Brucella meliten... [more]

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Properties
Property NameValue
Genbank descriptionC34008H11EF PostHarvC1 Citrus clementina cDNA clone C34008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930569 ID=FC930569; Name=FC930569; organism=Citrus clementina; type=EST; length=722bp
ATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTTTCT
ACGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCGTCT
GCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGCATC
CTCGGCCACGTCAGCTCCTAATTCCATCCATGGCAAACCAAAAGCAGAGC
AGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAGTGAAG
ATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGATAG
GTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCTAAGC
CATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTGGGA
GGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAGAGA
GGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTATTA
TGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATATGCA
ACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCAAAT
AATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAGGAA
CCAAGGTTGTCTATGTTGGAGATGGAAATACATAGTGCACTCTTGGCTTT
TGATGGCATCAGTTATTCCTTT
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