FC930589

Overview
NameFC930589
Unique NameFC930589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 67/181 (37.02%), Postives = 106/181 (58.56%), Query Frame = 3
Query:  204 HSKAQSG--MYCGQELGNLTSFGPSRVHADHASMFVKGLAQNGTPQWRN--DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRET-GETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSHCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            H   +SG  ++C +         P R    H S        +   + R+  DD++GH +   G+ L +RY+I+  +GEG FG+V++C+D    G  VA+K+V+++ +YREAA +EI VLE L   D  S   CVQ+  WFD+  H+CIVFE+LG S YDF+++  + PF +D +R++  Q+
Sbjct:   90 HRDIESGYRIHCSKSSVRSRRSSPKRKRNRHCSSHQSRSKSHRRKRSRSIEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQI 270          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: CLK2_MOUSE (Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 58/130 (44.62%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  345 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSH-CVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            DD +GH ++ +G+ L  RY+I+  +GEGT G+V+ C+D   G T VA+K++++++KY+EAA  EI+VLE +   D    + CVQ+ +WFDY  H+CI FE+LG S +DFL+   Y P+P+  VR +  QL
Sbjct:  144 DDAEGHLIYHVGDWLQERYEIVSTLGEGTSGRVVQCVDHRRGGTRVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQL 273          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: CLK1_MOUSE (Dual specificity protein kinase CLK1 OS=Mus musculus GN=Clk1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 58/130 (44.62%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  345 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETG-ETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSHCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            DD++GH +   G+ L++RY+I+  +GEG FG+V++C+D + G   VA+K+V+++ +Y EAA +EI VLE L   D  S   CVQ+  WF++R HICIVFE+LG S YDF+++  + PF +D +R++  Q+
Sbjct:  142 DDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKVGGRRVAVKIVKNVDRYCEAAQSEIQVLEHLNTTDPHSTFRCVQMLEWFEHRGHICIVFELLGLSTYDFIKENSFLPFRMDHIRKMAYQI 271          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 58/130 (44.62%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  345 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRET-GETVAIKVVRSIKKYREAAMTEIDVLELLKRYD-RSGSHCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            DD++GH +   G+ L +RY+I+  +GEG FG+V++C+D    G  VA+K+V+++ +YREAA +EI VLE L   D  S   CVQ+  WFD+  H+CIVFE+LG S YDF+++  + PF +D +R++  Q+
Sbjct:  141 DDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQI 270          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  345 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSG----SHCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            DD++ +Y   +GE L +RYK+L  +G GTF  V++C D  +   VAIK+VRS KKY E A+ EID+L  L++   S     SHC+++ + F +++HIC+VF+  G SLY+FL+K  YRP P+  ++ I +QL
Sbjct:  572 DDENDYYKVQVGEYLNNRYKVLCTVGSGTFSTVVECWDTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFKDHICLVFKRYGLSLYEFLKKNRYRPLPLSQIQNISKQL 703          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: CLK1_HUMAN (Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 74/215 (34.42%), Postives = 115/215 (53.49%), Query Frame = 3
Query:   96 RVLYQMEMDYVTGFAHSHMDRRPTKRPRLAWENPQAHSKAQSGMYCGQELGNLTSFGPSRVH--ADHASMFVKGLAQNGTPQWRNDDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETG-ETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-HCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            R + +   DY  G    H  R    R        Q HS   SG       G  +     R+H    H     K   +  T     DD++GH +   G+ L++RY+I+  +GEG FG+V++C+D + G   VA+K+V+++ +Y EAA +EI VLE L   D + +  CVQ+  WF++  HICIVFE+LG S YDF+++  + PF +D +R++  Q+
Sbjct:   71 RYIDEYRNDYTQGCEPGHRQRDHESRY-------QNHSSKSSG-----RSGRSSYKSKHRIHHSTSHRRSHGKSHRRKRTRSVE-DDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQI 272          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 48/123 (39.02%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  345 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSH-CVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVR 710
            DD+ G Y+  L +++  RY++L  IG+G+FGQV  CLD +  E VA+K++R+ K++   A+ E+ +LE L+R D+  +H  V ++++F +RNH+CI FE+LG +LY+ ++   +  F + +VR
Sbjct:  201 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNNHNVVHMKDFFYFRNHLCITFELLGINLYELMKNNSFHGFNLSIVR 323          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: DYRK4_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Homo sapiens GN=DYRK4 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 47/123 (38.21%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  345 DDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSH-CVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVR 710
            DD+ G YL  L +++  RY++L  IG+G+FGQV  CLD +  E VA+K++R+ K++ + A+ E+ +LE L++ D+  ++  V ++++F +RNH CI FE+LG +LY+ ++   ++ F + +VR
Sbjct:   86 DDEHGFYLKVLHDHIAYRYEVLETIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHQQALMELKILEALRKKDKDNTYNVVHMKDFFYFRNHFCITFELLGINLYELMKNNNFQGFSLSIVR 208          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: POM1_SCHPO (Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe GN=pom1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.710e-23
Identity = 47/138 (34.06%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  318 QNGTPQWRNDDKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSHC-VQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            +N +  +  DD+ G Y   LG+++  RY+++  +G+G+FGQVL C+D ETG+ VA+K++R+ K++   A+ E  +L+ ++ +D    +C VQ  + F +R+H+C+  E+LG +LY+ ++   ++  P+ +++ I RQL
Sbjct:  672 ENTSSNFGFDDERGDYKVVLGDHIAYRYEVVDFLGKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQKIREWDPLDEYCMVQYTDHFYFRDHLCVATELLGKNLYELIKSNGFKGLPIVVIKSITRQL 809          
BLAST of FC930589 vs. ExPASy Swiss-Prot
Match: KNS1_YEAST (Dual specificity protein kinase KNS1 OS=Saccharomyces cerevisiae GN=KNS1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 3
Query:  195 PQAHSKAQSGMYCGQELGNLTSFGPSRVHADHASMFVKGLAQNGTPQWRNDDKDGHYLFALGENLTS--RYKILRKIGEGTFGQVLDCLDRETGET-VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-HCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKKYYRPFPVDLVREIGRQL 728
            PQ++ K Q     G  L   TS G S   + + S F               DKDGHY++   +   S  R+ +   +G+GTFG+VL C+D +     VA+KV+R++ +YREAA TE+ +L+ +   D  G   C+ +R  FDY+NHIC+V ++ G S+YDF+       FP   ++ I RQL
Sbjct:  260 PQSNLKKQ----IGSSLRKFTSNGSSESASSNKSNF-------------KTDKDGHYVYQENDIFGSGGRFVVKDLLGQGTFGKVLKCIDNKYEPNYVAVKVIRAVDRYREAAKTELRILQTILNNDPQGQFQCLLLRECFDYKNHICLVTDLYGRSIYDFMCSNGIARFPGSHIQAIARQL 424          
The following BLAST results are available for this feature:
BLAST of FC930589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CLK4_HUMAN4.772e-2837.02Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK2_MOUSE4.772e-2844.62Dual specificity protein kinase CLK2 OS=Mus muscul... [more]
CLK1_MOUSE6.233e-2844.62Dual specificity protein kinase CLK1 OS=Mus muscul... [more]
CLK4_MOUSE1.389e-2744.62Dual specificity protein kinase CLK4 OS=Mus muscul... [more]
CLKA_DICDI2.368e-2743.94Probable serine/threonine-protein kinase clkA OS=D... [more]
CLK1_HUMAN3.093e-2734.42Dual specificity protein kinase CLK1 OS=Homo sapie... [more]
DYRK4_MOUSE3.201e-2439.02Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK4_HUMAN1.589e-2338.21Dual specificity tyrosine-phosphorylation-regulate... [more]
POM1_SCHPO2.710e-2334.06Dual specificity protein kinase pom1 OS=Schizosacc... [more]
KNS1_YEAST7.884e-2335.71Dual specificity protein kinase KNS1 OS=Saccharomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009B08EF PostHarvC1 Citrus clementina cDNA clone C34009B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930589 ID=FC930589; Name=FC930589; organism=Citrus clementina; type=EST; length=732bp
GAAAGAACAGCGGCCTCACAAGCTTTTGCGACAAGGAAGAAAAATTCAAT
TGATCTCTTCCCGTAATTGATGAATCGATAAGTCAATCTGGGGTTAGGGT
TTTGTATCAGATGGAAATGGACTACGTTACAGGGTTTGCTCACAGTCACA
TGGATCGTCGTCCCACGAAGAGACCTCGATTAGCTTGGGAAAACCCTCAA
GCTCACTCTAAGGCTCAGTCAGGAATGTATTGTGGACAAGAGTTGGGGAA
TCTGACAAGCTTTGGGCCATCAAGGGTACATGCAGACCATGCTAGTATGT
TTGTAAAGGGATTGGCTCAAAATGGCACTCCCCAATGGCGAAATGATGAC
AAAGATGGACATTACCTGTTTGCGCTTGGAGAGAATTTAACTTCTCGCTA
TAAAATCCTCAGAAAAATTGGTGAAGGAACTTTTGGTCAGGTTTTGGATT
GTTTAGATAGGGAAACAGGAGAGACGGTTGCCATAAAAGTTGTGCGAAGT
ATTAAGAAATACCGTGAAGCAGCAATGACAGAAATTGATGTGCTTGAGTT
GCTCAAAAGATATGACAGAAGTGGCAGTCATTGTGTTCAAATAAGGAACT
GGTTTGACTATCGTAACCATATCTGTATCGTGTTTGAGATGCTTGGACCT
AGCCTATACGATTTTCTTCGGAAAAAGTATTATCGCCCATTTCCGGTTGA
TCTTGTCCGTGAGATTGGCAGACAACTGNTGG
back to top