FC930591

Overview
NameFC930591
Unique NameFC930591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930591_ssr2 microsatellite FC930591_ssr2:2..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15182 contig Ccv1_Contig15182:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930591 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 78/210 (37.14%), Postives = 116/210 (55.24%), Query Frame = 2
Query:  125 TETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKSC*VVDENTICVAAILGST 748
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  +    VDE TI V  ILG T
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGIT 211          
BLAST of FC930591 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.552e-29
Identity = 71/189 (37.57%), Postives = 108/189 (57.14%), Query Frame = 2
Query:  188 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKSC*VVDENTICVAAILGST 748
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N       VDE TI +  ILG T
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGIT 209          
The following BLAST results are available for this feature:
BLAST of FC930591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO8.795e-3337.14Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO1.552e-2937.57Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009B10EF PostHarvC1 Citrus clementina cDNA clone C34009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930591 ID=FC930591; Name=FC930591; organism=Citrus clementina; type=EST; length=749bp
GACTCACTCACTCACTCTCAATCACTCTCTTTCCTTTGTATCTCAGCAAT
TTCTATTCATTTCTCTCAGACTCAAGAGTCTCTCTTCTCTGCACAAAACA
AAAACAAAAATGGTGATTTCAACAACAGAAACAGACTCCAGGGAGATTTT
GAACTCCACATTTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCA
AGATGCCAGATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAAT
GATGAGCTGATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGT
GACCACTTGGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTA
ATAAAAACTATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAG
AATCGGTGTGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGA
TGACAAGACTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAA
TGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAG
CAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCA
GGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGG
TGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAAAAGCTGTTGA
GTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCT
back to top