FC930598

Overview
NameFC930598
Unique NameFC930598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10185 contig Ccv1_Contig10185:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_ASHGO (Inorganic pyrophosphatase OS=Ashbya gossypii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 48/150 (32.00%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  278 PWHDLEI-GPGAPKIFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH 655
            P+HD+ +      +IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDPLDVL I +     G   + K +G+M ++D+GE D KII +   DP     NDI+++  H
Sbjct:   29 PFHDIPLYADEENQIFNMVVEIPRWTNAKLEITKEEAMNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNVAHPETKAYGDNDPLDVLEIGETIAYTGQVKQVKVLGVMALLDEGETDWKIIVIDVHDPLAPKLNDIEDVEKH 178          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_ZYGBA (Inorganic pyrophosphatase OS=Zygosaccharomyces bailii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 47/156 (30.13%), Postives = 76/156 (48.72%), Query Frame = 2
Query:  278 PWHDLEIGPGAPK-IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIR 673
            P+HD+ +     K IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDP+DVL I +     G   + K +G+M ++D+GE D K+IA+  +DP     +DI+++  +   ++R
Sbjct:   29 PFHDIPLYADEDKQIFNMVVEIPRWTNAKLEITKEENLNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNVVHPETKAVGDNDPVDVLEIGETIGYTGQVKQVKVLGIMALLDEGETDWKVIAIDVNDPLAPKLHDIEDVEKYFPGQLR 184          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_DEBHA (Inorganic pyrophosphatase OS=Debaryomyces hansenii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  227 LNERILSSMSRRSVAAHPWHDLEIGPGAPK-IFNCVIEIGKGSKVKYELDK-----------KSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH 655
            L+ R+    + + V+  P+HD+ +     K + N ++E+ + +  K E+ K           K G +   R  +    Y HNYG  P+T  +            DNDPLDV  I ++    G   + K +G+M ++D+GE D KII +  +DP     NDI+++  H
Sbjct:   14 LDYRVFIEQNGKPVS--PFHDIPLYANEEKTVLNMIVEVPRWTNAKLEISKEEKLNPILQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNQVHPETKAKGDNDPLDVCEIGEQVGYVGQVKQVKVLGVMALLDEGETDWKIIVIDVNDPLASKLNDIEDVETH 178          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_YEAST (Inorganic pyrophosphatase OS=Saccharomyces cerevisiae GN=IPP1 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 44/133 (33.08%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  317 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKEL 646
            IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDP+DVL I +     G   + KA+G+M ++D+GE D K+IA+  +DP     NDI+++
Sbjct:   43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDV 175          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_CANGA (Inorganic pyrophosphatase OS=Candida glabrata GN=IPP1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 46/147 (31.29%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  278 PWHDLEI-GPGAPKIFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKEL 646
            P+HD+ +       IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDP+DVL I +     G   + K +G+M ++D+GE D K+IA+  +DP     NDI+++
Sbjct:   29 PFHDIPLYADKEENIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNQTHPETKAVGDNDPVDVLEIGETIGYTGQVKQVKVLGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDV 175          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_CANAL (Inorganic pyrophosphatase OS=Candida albicans GN=IPP1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  278 PWHDLEIGPGAPK-IFNCVIEIGKGSKVKYELDK-----------KSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH 655
            P+HD+ +     K I N ++E+ + +  K E+ K           K G +   R  +    Y HNYG  P+T  +            DNDPLDV  I ++    G   + K +G+M ++D+GE D K+I +  +DP     NDI+++  H
Sbjct:   30 PFHDIPLYANEEKTILNMIVEVPRWTNAKLEISKEQKLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNQSHPETKAKGDNDPLDVCEIGEKVATVGEVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVETH 179          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR2_MOUSE (Inorganic pyrophosphatase 2, mitochondrial OS=Mus musculus GN=Ppa2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 42/133 (31.58%), Postives = 68/133 (51.13%), Query Frame = 2
Query:  317 IFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKEL 646
            +FN V+EI + +  K E+  +  L      I   ++ Y+  ++PH     NYG +P+T             C DNDP+DV  I  + +  G  +  K +G + +IDQ E D KIIA+  +DPE   ++DI ++
Sbjct:   86 LFNMVVEIPRWTNAKMEIATEEPLNPIKQDIKNGKLRYTPNIFPHKGYIWNYGALPQTWEDPHLRDKSTDCCGDNDPIDVCEIGSKVLSRGDVVHVKILGTLALIDQSETDWKIIAINVNDPEAEKFHDIDDV 218          
The following BLAST results are available for this feature:
BLAST of FC930598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
IPYR_ASHGO1.134e-1132.00Inorganic pyrophosphatase OS=Ashbya gossypii GN=IP... [more]
IPYR_ZYGBA4.310e-1130.13Inorganic pyrophosphatase OS=Zygosaccharomyces bai... [more]
IPYR_DEBHA5.630e-1128.14Inorganic pyrophosphatase OS=Debaryomyces hansenii... [more]
IPYR_YEAST7.352e-1133.08Inorganic pyrophosphatase OS=Saccharomyces cerevis... [more]
IPYR_CANGA7.352e-1131.29Inorganic pyrophosphatase OS=Candida glabrata GN=I... [more]
IPYR_CANAL7.352e-1129.33Inorganic pyrophosphatase OS=Candida albicans GN=I... [more]
IPYR2_MOUSE9.603e-1131.58Inorganic pyrophosphatase 2, mitochondrial OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC34009C05EF PostHarvC1 Citrus clementina cDNA clone C34009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930598 ID=FC930598; Name=FC930598; organism=Citrus clementina; type=EST; length=756bp
GCTCTTGCTTTCCTCTACTTAAGCGCCCGTAGAGGAACTTAACTTTAATA
TCTTCGCCATTACGCCTCTCTCTTTTCGAGATCGGTGCGTTTCTTTGTGG
TCTTGAAGCTTCGTTCTCGTTAGGCCCTGTTTGGCTTTCAGTACTTGAAC
CGTTACGGTTATGATGGCTCCACCAATTGAGACTTCAAGCAAAACTCCTG
TCTCCCAACCTCCAGCACATCCTCCGCTTAATGAAAGGATACTTTCTTCA
ATGAGCAGGAGGTCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGG
ACCTGGAGCTCCAAAGATTTTCAATTGCGTGATTGAAATTGGGAAAGGGA
GCAAGGTGAAATATGAACTTGACAAAAAATCTGGACTGATCATGGTTGAT
CGTGTTCTTTACTCTTCAGTTGTGTACCCCCATAACTATGGTTTCATACC
TCGTACTCTTTGCGAAGACAATGATCCCCTTGATGTCCTGATCATCATGC
AGGAGCCAGTTCTTCCAGGCTGCTTTCTTCGGGCTAAAGCCATCGGACTC
ATGCCTATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTCTG
TGCTGATGATCCCGAGTACCGACACTACAATGACATTAAGGAGCTTCCAC
CACATCGTTTGGCTGAGATCCGCCGCTTCTTTGAAGACTGTATCCTTTCT
ANCATTTATAATGGAAGCATATGTTTTATTTGTGAATTGCCCTTTCTTTC
CTTGAT
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