FC930598

Overview
NameFC930598
Unique NameFC930598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10185 contig Ccv1_Contig10185:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_AGRT5 (Inorganic pyrophosphatase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ppa PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 2
Query:  290 LEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFE 685
            + IG   P   N ++E+  G   +KYE+DK +G ++VDR LY+ + YP NYGF+P TL +D DP+DVLI    P++PGC +  + IG+M M D G KD+KI+AV A      Y   ++  +LP   L +I  FFE
Sbjct:    6 ISIGKNPPDDINVIVEVPVGGHPIKYEMDKDAGALIVDRFLYTPMTYPGNYGFVPHTLSDDGDPIDVLICNTRPLVPGCVINVRPIGVMIMEDDGGKDEKILAVPAPKLTQRYDKVHNYTDLPEITLKQIEHFFE 140          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_MYCTU (Inorganic pyrophosphatase OS=Mycobacterium tuberculosis GN=ppa PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  320 FNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFF 682
            F+  IEI KG + KYE+D ++G + +DR LY+ + YP +YGFI  TL +D DPLD L+++ +PV PG  + A+ +G+  M+D+   DDK++ V A DP + H  DI ++P   L  I+ FF
Sbjct:    3 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 123          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_MYCBO (Inorganic pyrophosphatase OS=Mycobacterium bovis GN=ppa PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  320 FNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFF 682
            F+  IEI KG + KYE+D ++G + +DR LY+ + YP +YGFI  TL +D DPLD L+++ +PV PG  + A+ +G+  M+D+   DDK++ V A DP + H  DI ++P   L  I+ FF
Sbjct:    3 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 123          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_BARBK (Inorganic pyrophosphatase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ppa PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 2
Query:  287 DLEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFE 685
            ++ IG   P+  N +IE+   S+ VKYE+DKKSG + VDR + +S+VYP NYGFIP TL ED+DP+DVL+    P++PGC +  + IG + M D G KD+KIIAV       +Y   +D  +L  + L +I  FF+
Sbjct:    5 EIPIGNNPPEDVNVIIEVPVDSQPVKYEMDKKSGSLFVDRFISTSMVYPGNYGFIPHTLSEDSDPIDVLVCNTRPLIPGCVINVRPIGALIMEDDGGKDEKIIAVPTPKLTQQYIGIHDYTDLTENILKKIEHFFK 140          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_RHIME (Inorganic pyrophosphatase OS=Rhizobium meliloti GN=ppa PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  290 LEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFE 685
            + IG   P+  N ++E+  G   +KYE+DK++G ++VDR LY+ + YP NYGF+P TL +D DP+DVLI    P++PGC +  + IG+M M D   +D+KIIAV +      Y   +D  +LP   L +I  FFE
Sbjct:    6 ISIGKNPPEDVNVIVEVPVGGHPIKYEMDKEAGTLVVDRFLYTPMTYPGNYGFVPHTLSDDGDPIDVLICNTRPLVPGCVINVRPIGVMMMEDNSGQDEKIIAVPSAHLTKRYDKVHDYTDLPEITLKQIEHFFE 140          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_CAUCR (Inorganic pyrophosphatase OS=Caulobacter crescentus GN=ppa PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 56/135 (41.48%), Postives = 85/135 (62.96%), Query Frame = 2
Query:  290 LEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFE 685
            + +G   P   N +IEI +G + VKYE+DK+SG +MVDR L++++ YP NYGFIP TL +D DP D++++   PV+PG  +R + IG + M+D+   D+KI+AV  D   P Y      ++LP     +I  FF+
Sbjct:    6 IAVGVNPPYDLNAIIEIPQGGEPVKYEIDKESGALMVDRFLHTAMFYPANYGFIPHTLADDGDPADIMVVGPTPVVPGAIIRCRPIGTLMMVDEAGSDEKILAVPVDKLHPFYTGVTSWRDLPTILTEQIAHFFQ 140          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_XANAC (Inorganic pyrophosphatase OS=Xanthomonas axonopodis pv. citri GN=ppa PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD--PEYRHYNDIKELPPHRLAEIRRFFE 685
            G   P+  N VIEI K S+ VKYE+DK SG I VDR+L + + YP NYG++P TLC D DP DVL+++  P++PG  +R + +G++ M D+   D+KI+AV  +     Y H  DI ++  H +  I  FFE
Sbjct:    9 GKNLPEEINVVIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPADVLVVLPLPLVPGSVVRCRPVGVLRMSDEAGSDEKILAVPIEKIFSGYAHIEDINQVSSHWMERIGHFFE 140          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_MYCGE (Inorganic pyrophosphatase OS=Mycoplasma genitalium GN=ppa PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  317 IFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFE 685
            + + ++EI K SK+KYE D+++G I VDR+L+ S  YP NYGFI  TL  D D LD  I   +P LP   +  + +G + MID GE D K++ V   DP Y+  N I +LP HR+ EI  F +
Sbjct:    5 LIDVIVEIPKNSKIKYEYDRQTGQIRVDRILFGSESYPQNYGFIKNTLDWDGDELDCFIFADQPFLPATVVPTRIVGALEMIDDGEIDTKLLGVIDCDPRYKEINQISDLPKHRIEEILIFLK 127          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_XANCP (Inorganic pyrophosphatase OS=Xanthomonas campestris pv. campestris GN=ppa PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD--PEYRHYNDIKELPPHRLAEIRRFFE 685
            G   P+  N VIEI K S+ VKYE+DK SG I VDR+L + + YP NYG++P TLC D DP DVL+++  P++PG  +R + +G++ M D+   D+KI+AV  +     Y H  DI ++  H +  I  FFE
Sbjct:    9 GKNLPEEINVVIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPADVLVVLPLPLVPGSVVRCRPVGVLRMSDEAGSDEKILAVPIEKIFSGYAHIEDIDQVSSHWMERIGHFFE 140          
BLAST of FC930598 vs. ExPASy Swiss-Prot
Match: IPYR_XYLFT (Inorganic pyrophosphatase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ppa PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.946e-25
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD--PEYRHYNDIKELPPHRLAEIRRFFE 685
            G   P+  N +IEI K S+ VKYE+DK SG I VDR+L + + YP NYG++P TLC D DP+DV++++  P++PG  +R + +G++ M D+   D+K++AV        Y H  DI ++  H L  I  FFE
Sbjct:    9 GNNLPEEINVIIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPVDVMVVLPLPLVPGSVVRCRPVGVLQMKDEAGNDEKLLAVPVSKIFSGYSHIEDINQVSAHWLERIGHFFE 140          
The following BLAST results are available for this feature:
BLAST of FC930598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
IPYR_AGRT51.057e-2542.96Inorganic pyrophosphatase OS=Agrobacterium tumefac... [more]
IPYR_MYCTU1.380e-2542.98Inorganic pyrophosphatase OS=Mycobacterium tubercu... [more]
IPYR_MYCBO1.380e-2542.98Inorganic pyrophosphatase OS=Mycobacterium bovis G... [more]
IPYR_BARBK1.380e-2544.85Inorganic pyrophosphatase OS=Bartonella bacillifor... [more]
IPYR_RHIME2.354e-2542.22Inorganic pyrophosphatase OS=Rhizobium meliloti GN... [more]
IPYR_CAUCR2.354e-2541.48Inorganic pyrophosphatase OS=Caulobacter crescentu... [more]
IPYR_XANAC4.016e-2543.94Inorganic pyrophosphatase OS=Xanthomonas axonopodi... [more]
IPYR_MYCGE4.016e-2543.90Inorganic pyrophosphatase OS=Mycoplasma genitalium... [more]
IPYR_XANCP5.245e-2543.94Inorganic pyrophosphatase OS=Xanthomonas campestri... [more]
IPYR_XYLFT8.946e-2542.42Inorganic pyrophosphatase OS=Xylella fastidiosa (s... [more]

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Properties
Property NameValue
Genbank descriptionC34009C05EF PostHarvC1 Citrus clementina cDNA clone C34009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930598 ID=FC930598; Name=FC930598; organism=Citrus clementina; type=EST; length=756bp
GCTCTTGCTTTCCTCTACTTAAGCGCCCGTAGAGGAACTTAACTTTAATA
TCTTCGCCATTACGCCTCTCTCTTTTCGAGATCGGTGCGTTTCTTTGTGG
TCTTGAAGCTTCGTTCTCGTTAGGCCCTGTTTGGCTTTCAGTACTTGAAC
CGTTACGGTTATGATGGCTCCACCAATTGAGACTTCAAGCAAAACTCCTG
TCTCCCAACCTCCAGCACATCCTCCGCTTAATGAAAGGATACTTTCTTCA
ATGAGCAGGAGGTCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGG
ACCTGGAGCTCCAAAGATTTTCAATTGCGTGATTGAAATTGGGAAAGGGA
GCAAGGTGAAATATGAACTTGACAAAAAATCTGGACTGATCATGGTTGAT
CGTGTTCTTTACTCTTCAGTTGTGTACCCCCATAACTATGGTTTCATACC
TCGTACTCTTTGCGAAGACAATGATCCCCTTGATGTCCTGATCATCATGC
AGGAGCCAGTTCTTCCAGGCTGCTTTCTTCGGGCTAAAGCCATCGGACTC
ATGCCTATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTCTG
TGCTGATGATCCCGAGTACCGACACTACAATGACATTAAGGAGCTTCCAC
CACATCGTTTGGCTGAGATCCGCCGCTTCTTTGAAGACTGTATCCTTTCT
ANCATTTATAATGGAAGCATATGTTTTATTTGTGAATTGCCCTTTCTTTC
CTTGAT
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